Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19n17f
(311 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 2.0
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 3.5
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 3.5
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 3.5
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 4.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 4.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 4.6
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 21 4.6
DQ435335-1|ABD92650.1| 135|Apis mellifera OBP18 protein. 20 8.0
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 2.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 9 VTTMNSDLNKISIVHSLD*HIGAPSCLGREGCKTQPP*QRLVMTVIP 149
VT M+ + + I H H G SC+ R QRLV+ V P
Sbjct: 660 VTNMDQYNSILMIEHLSPDHNGNYSCVARNLAAEVSHTQRLVVHVPP 706
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 9 VTTMNSDLNKISIVHSLD*HIG 74
+++ N+ L KIS V S+D ++G
Sbjct: 267 MSSTNAALPKISYVKSIDVYLG 288
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 9 VTTMNSDLNKISIVHSLD*HIG 74
+++ N+ L KIS V S+D ++G
Sbjct: 267 MSSTNAALPKISYVKSIDVYLG 288
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.0 bits (42), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 9 VTTMNSDLNKISIVHSLD*HIG 74
+++ N+ L KIS V S+D ++G
Sbjct: 206 MSSTNAALPKISYVKSIDVYLG 227
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 20.6 bits (41), Expect = 4.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 136 ITKRCQGGWVLHP 98
I ++ G WV+HP
Sbjct: 71 IRQKAAGHWVIHP 83
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.6 bits (41), Expect = 4.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 136 ITKRCQGGWVLHP 98
I ++ G WV+HP
Sbjct: 71 IRQKAAGHWVIHP 83
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.6 bits (41), Expect = 4.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 136 ITKRCQGGWVLHP 98
I ++ G WV+HP
Sbjct: 71 IRQKAAGHWVIHP 83
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 20.6 bits (41), Expect = 4.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 125 TLGNDCDPSAS*FYD 169
TL DCD S F+D
Sbjct: 127 TLSYDCDVDVSTFFD 141
>DQ435335-1|ABD92650.1| 135|Apis mellifera OBP18 protein.
Length = 135
Score = 19.8 bits (39), Expect = 8.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 176 KATVTMERFIKSLDYEKEDNER 241
+A V + R S+D +KED+ R
Sbjct: 27 RAVVPICRIETSIDQQKEDDFR 48
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,658
Number of Sequences: 438
Number of extensions: 1394
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6595479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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