Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n16r
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    32   0.080
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.75 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.0  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   4.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.3  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   7.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   7.0  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   9.2  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 24/89 (26%), Positives = 39/89 (43%)
 Frame = -2

Query: 395 SRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDXXXXXXXXX 216
           S  +V +    SS S P+S  TT+ T P S SSS++ S   +  S++  S          
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 187

Query: 215 XXXXXTQLKSSIG*RTPSRSIDTVSSSAN 129
                +   SS    + S S+   SS+++
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSS 216


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 162 PIDRYRQQQCKFTMPSICRPSFCGPLTGT 76
           P  + R Q C+   P +C P  C P T T
Sbjct: 281 PCGKTRGQDCEHPCPLLCHPGPCPPCTAT 309


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/97 (23%), Positives = 47/97 (48%)
 Frame = -2

Query: 545 YGLTLFTTNLFRTALFLHAQLRQFLDRGCSL*SAGETSTISLAPWWMVASSRQTVPTRKD 366
           Y  T+ +T++  + +        F+    S  S+  +S+ S +P    +SS ++  + K 
Sbjct: 123 YSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSS-SP---SSSSSKSSSSSKS 178

Query: 365 GSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNA 255
            SS S  +   ++S +  +S SSS++ S     PS++
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSS 215


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 382 YRRGRMVQVYPDQLRETLPREQSPVRILRPRM-VHFVKPRHQ 260
           +  G + ++  D +  T PRE SPV   RP +   F+K RH+
Sbjct: 137 FLEGPVEEIPLDDIEPTSPREASPVFNGRPPIPPEFLKSRHK 178


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 371 KDGSSLS*PTSRDTTSGTEPRSDSSSTNGSF 279
           K+G  L+   S DT+S T P   S S  GSF
Sbjct: 148 KEGRQLTTENSSDTSSMTHPVQPSPSVLGSF 178


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 571 HNCLD*SRSMALHSSPRIYSGLHYSSMP--NCVNSWTVGAPYDQLERPQQFP 422
           +N  D SR+    SSP I S   Y SMP  N V+S  + AP        QFP
Sbjct: 370 NNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPVPNSN--SQFP 419


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -1

Query: 351 LTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDWVK 172
           L++ ++ ++ N  P+   +H   + S   I+R+F  F D     + VF +N +E++ W+ 
Sbjct: 424 LSSLQQLFVENALPYSEALH--LLDS---IERSFRLFNDSTVFDDTVFALNISEILSWIL 478

Query: 171 NPVPID 154
           + V  D
Sbjct: 479 SSVVRD 484


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 303 FFVHEWFISSNPAIK--RAFVRFMDIINNLNDVFMVNSAEV 187
           F+VH WF  ++P I+     +R +D + N   +F+  SA V
Sbjct: 594 FWVHTWFDKTHPDIESITGIIRCIDKVPNDGPMFVHCSAGV 634


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 294 HEWFIS-SNPAIK-RAFVRFMDIINNLNDVFMVNSAEVIDW 178
           H WF S SN A    A +RF+D +N   ++ + ++ +V+ W
Sbjct: 510 HAWFWSVSNEAHDGSAVLRFIDRVNFTKNLNIASAVDVMGW 550


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 440 ETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPP 264
           E  T+S +    ++SS  +   T  D + +  P           + D  S NG  +  PP
Sbjct: 360 ENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESENGKSKFPPP 419

Query: 263 SNALLS 246
           S  L++
Sbjct: 420 SQTLVT 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,596,033
Number of Sequences: 5004
Number of extensions: 81682
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)