Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n11r
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.50 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   8.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 444 IILLEDIDAAFVSREDTPTQKAAYEGLNRVTFSGLLNC 331
           I++   +   F+   DTP  +A+   L+ V  SG+L C
Sbjct: 668 ILITLFVCGVFLKHNDTPVVRASGRELSYVLLSGILLC 705


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 143 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 174


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 143 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 174


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 143 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 174


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 143 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 174


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 143 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 174


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 143 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 174


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 211 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 242


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 687 LTERIVADCLDFINNPQWYTDRGIPYRRGYLLY 589
           L+     D  DFI N +WY   G+P ++  + Y
Sbjct: 211 LSSETGGDLSDFITNGEWYL-IGMPGKKNTITY 242


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = -2

Query: 726 RRRPIHSVVLRSG---LTERIVA 667
           R+RP+H+VV R G   +T+R+ A
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPA 380


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 810 TMALKQHEGMTVMYTAMGSEWRP 742
           T  ++ H  MT+M+T     W+P
Sbjct: 86  TSVMELHSWMTLMWTDSHLSWKP 108


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 726 RRRPIHSVVLRSG 688
           R+RP+H+VV R G
Sbjct: 389 RKRPMHNVVYRPG 401


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 726 RRRPIHSVVLRSG 688
           R+RP+H+VV R G
Sbjct: 409 RKRPMHNVVYRPG 421


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 726 RRRPIHSVVLRSG 688
           R+RP+H+VV R G
Sbjct: 358 RKRPMHNVVYRPG 370


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 381 AAYEGLNRVTFSGLLNCLDGVAST 310
           A Y+G   +  +G +NC   +AS+
Sbjct: 142 AYYDGGANLNLNGTVNCTSSIASS 165


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 285 TNYLERLDPALIRPGRVDMKEYVGYCNQEQVELMFLRFYKGE 160
           T YL  +DP        D+ +Y GY  Q+ V      FY  E
Sbjct: 317 TCYLSHVDP--------DVVQYFGYLPQDMVGRSLFDFYHPE 350


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 285 TNYLERLDPALIRPGRVDMKEYVGYCNQEQVELMFLRFYKGE 160
           T YL  +DP        D+ +Y GY  Q+ V      FY  E
Sbjct: 23  TCYLSHVDP--------DVVQYFGYLPQDMVGRSLFDFYHPE 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,803
Number of Sequences: 438
Number of extensions: 4509
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)