Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n11f
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...   140   3e-34
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   6.7  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   8.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.8  

>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score =  140 bits (338), Expect = 3e-34
 Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
 Frame = +3

Query: 210 ILRKGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQKDSG 389
           ILR+GL +   L +R  ++++E+P ++KSY   L W++    R +  L+VE++ + K   
Sbjct: 40  ILRRGLISGASLVKRRMLVSVEIPSKEKSYNAFLHWMSTVPKRYSNQLAVESNRQLKMPQ 99

Query: 390 QIRTKYD---------FIPSVGQHFFRYGGTWIRVDRTREQQTLDLHMGIPWETVTLTSF 542
             R K D          +P  G+H+ +Y   WI+V+R R  +  DL  G PWET+TLT+ 
Sbjct: 100 NAREKPDKQVANRIFSLVPGPGKHYIKYKKCWIQVERERSNRLQDLTTGTPWETITLTTL 159

Query: 543 GRNKQLYYGILEEARTMALKQHEGMTVMYTAMGSEWRPFGHPRRRRPIHSVVLRSGLTER 722
            R++ ++  +L EA+       +  T +YTA  +EW+PFGHPR +R + SVVL S + + 
Sbjct: 160 SRDRGIFSELLLEAQKFMQSAQKNKTTIYTAWATEWKPFGHPRSKRMLSSVVLESNVKKM 219

Query: 723 IVADCLDFINN 755
           I  D  DF+ N
Sbjct: 220 ITDDVHDFLRN 230


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +3

Query: 306 LLQWITQKGARKTQHLSVETSFEQKD-----SGQIRTKYDFIPSVGQHFF-RYG 449
           L +WI+    +K  H    ++FE  D     S   R  +DF+   G  F+ R+G
Sbjct: 249 LWEWISDDNGKKFSHCHFWSNFEIADLDFFRSDSYRKYFDFLDKKGGFFYERWG 302


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 544 PNEVNVTVSH-GIPICRSKVCCSLVRSTLIHVPPYRKKCWPTLGIKSY 404
           P++ N+TV   G P+        +   TLIH   Y++  W +LGI  Y
Sbjct: 182 PSKSNMTVGRVGTPVY-------MAPETLIHAVSYKESDWWSLGITFY 222


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 559 NCLFLPNEVNVTVSHGIPICRSKVCCSLVRSTLIHV 452
           +C F PNE N+ +S  + + R  +  +  R+   H+
Sbjct: 778 SCSFDPNETNLFISSAVEVLRETLLDAANRAVASHL 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,307
Number of Sequences: 5004
Number of extensions: 66029
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)