Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n11f
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    29   4.0  
03_01_0470 + 3619417-3619572,3619681-3619759,3620017-3620258,362...    29   4.0  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    29   5.3  
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    28   9.2  

>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
            3003571-3004442,3004592-3004773,3005206-3005295,
            3005388-3005675,3005776-3005997,3006053-3006133,
            3006634-3006861
          Length = 1475

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 213  LRKGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQKDSGQ 392
            LR  LQ+ M     +C    E+  +  S +  L+ + QK A+K  HL +    +QK  G 
Sbjct: 1135 LRLNLQSMMHELDANCKRLEELTAQADSDKRNLEVLMQKNAKKADHLRLAELEQQKADGN 1194

Query: 393  I 395
            +
Sbjct: 1195 V 1195


>03_01_0470 +
           3619417-3619572,3619681-3619759,3620017-3620258,
           3620804-3621148,3623592-3624116
          Length = 448

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +3

Query: 219 KGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQ--KDSGQ 392
           KG + +   FR H    L+  CR    +WLL        ++TQH  +++ +++  K++ +
Sbjct: 6   KGCRVAFTPFRHHAFEALKAACR----RWLLP-NGILSCKQTQHACIKSDYQKFYKNNSR 60

Query: 393 IRTKYDFIPSVGQHFFRYGG 452
              K+  I +  + ++ +GG
Sbjct: 61  FPWKFSKISAFPKEYY-FGG 79


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 580 SSRIP*YNCLFLPNEVNVTVSHGIPICRSKVCC--------SLVRSTLIHVPPYRKKCWP 425
           S  +P  N +F  N   + + H  P+ R +           + VR  L+H+  ++   WP
Sbjct: 208 SINLPVVNQVFSSNRA-IIIPHTSPLARIRPLAGRYVPPEVAAVRVPLLHLSNFQINDWP 266

Query: 424 TLGIKSYLVLI 392
            L  KSY +++
Sbjct: 267 ELSAKSYAIMV 277


>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 458 PCSTISEKVLANTRNKVVFS-SYLSRIFLFKRSLD 357
           PC +++EKVL  +  K++ S S +S + L+ R +D
Sbjct: 234 PCWSLNEKVLIQSLYKIIVSASEISPVILYIRDVD 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,910
Number of Sequences: 37544
Number of extensions: 387242
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)