Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19n11f
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 140 1e-33
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 134 5e-32
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z49070-4|CAE45098.2| 528|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical ... 29 3.6
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 29 4.7
AL132851-2|CAB60412.1| 180|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 140 bits (338), Expect = 1e-33
Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 1/205 (0%)
Frame = +3
Query: 144 SLAQNPYXXXXXXXXXXXXXXXILRKGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWIT 323
+L QNPY LR+ Q S FRR MI L++ D +Y WLL +I
Sbjct: 27 NLNQNPYFNAGAGLAGIGIAMSFLRRTAQISNTYFRRRFMINLQINNEDAAYPWLLDFIN 86
Query: 324 QKGARKTQHLSVETSFEQKDSGQIRTKYDFIPSVGQHFFRYGGTWIRVDRTREQQTLDLH 503
+ A +T++LS T Q +SG+ F+P G HFF + WI+V+R RE+Q +
Sbjct: 87 NRSATQTRNLSANTVVHQAESGKTELSISFLPGHGTHFFVHDYRWIKVERQREKQVIQRD 146
Query: 504 -MGIPWETVTLTSFGRNKQLYYGILEEARTMALKQHEGMTVMYTAMGSEWRPFGHPRRRR 680
+ P+ETVTLT+ G + + + +LE++ A+ E V+Y A+G +W FG PR++R
Sbjct: 147 GIRTPFETVTLTTLGSDVKFFKRMLEQSAKEAIDNAETGLVIYQAVGPQWIRFGVPRKKR 206
Query: 681 PIHSVVLRSGLTERIVADCLDFINN 755
I SV+L + E +V D +FI++
Sbjct: 207 DIESVILDGRICEELVEDFQEFISS 231
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 134 bits (325), Expect = 5e-32
Identities = 68/182 (37%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
Frame = +3
Query: 213 LRKGLQTSMVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQKDSGQ 392
LR+ Q S FRR MI L++ D +Y WLL +I + A +T++LS T Q +SG+
Sbjct: 4 LRRTAQISNTYFRRRFMINLQINNEDAAYPWLLDFINNRSATQTRNLSANTVVHQAESGK 63
Query: 393 IRTKYDFIPSVGQHFFRYGGTWIRVDRTREQQTLDLH-MGIPWETVTLTSFGRNKQLYYG 569
F+P G HFF + WI+V+R RE+Q + + P+ETVTLT+ G + + +
Sbjct: 64 TELSISFLPGHGTHFFVHDYRWIKVERQREKQVIQRDGIRTPFETVTLTTLGSDVKFFKR 123
Query: 570 ILEEARTMALKQHEGMTVMYTAMGSEWRPFGHPRRRRPIHSVVLRSGLTERIVADCLDFI 749
+LE++ A+ E V+Y A+G +W FG PR++R I SV+L + E +V D +FI
Sbjct: 124 MLEQSAKEAIDNAETGLVIYQAVGPQWIRFGVPRKKRDIESVILDGRICEELVEDFQEFI 183
Query: 750 NN 755
++
Sbjct: 184 SS 185
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = -1
Query: 564 NIIACFCQMKLMLPFPMVSPY---AGPKSAVPLYGLLLSMFHHIGKSVG 427
N+I FC +++ L F + PY P + +P +G++L+ F IG++VG
Sbjct: 38 NLIQYFCGLQMSLYFTSMWPYLLKLDPTAQLPFFGIILASF-SIGQAVG 85
>Z49070-4|CAE45098.2| 528|Caenorhabditis elegans Hypothetical
protein T09F3.5 protein.
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +3
Query: 237 MVLFRRHCMITLEVPCRDKSYQWLLQWITQKGARKTQHLSVETSFEQKDSGQ---IR--- 398
M +FR+ ++ L S+Q ++W+ G R+ ++ EQ ++ +R
Sbjct: 1 MFIFRKVSLLQLPSTSTRSSFQLDIRWL---GPRRESFREFTSNMEQNEANLGKFVRVDT 57
Query: 399 TKYDFIPSVGQHFFRYGGTWIRVDRTREQQTL 494
T Y F S G+ +YG W + D +TL
Sbjct: 58 TGYSFTDSTGKRIAKYGIYWGKDDTRNGIRTL 89
>AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical
protein F32D1.3 protein.
Length = 774
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -1
Query: 564 NIIACFCQMKLMLPFPMVSPYAGPKSAVPLYGLLLSMF 451
N +A +C + L M S + PKS +PLY LLLS+F
Sbjct: 373 NTVA-YCILAAFLA-EMCSKRSSPKSVLPLYILLLSLF 408
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 530 CYRFPWYPHMQVQSLLFPCTVYSYPCST 447
CY+F Y + + ++LF T+ SY C T
Sbjct: 444 CYKFDGYILLDIYAVLFGFTIASYVCLT 471
>AL132851-2|CAB60412.1| 180|Caenorhabditis elegans Hypothetical
protein Y53H1B.4 protein.
Length = 180
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 164 FWCRFWTFRCRCKCSYSTKRIA 229
F+C +W +C K Y+ R A
Sbjct: 135 FYCEYWKTKCNVKLEYTVSRFA 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,971,970
Number of Sequences: 27780
Number of extensions: 366838
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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