Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n10r
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    55   1e-08
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.82 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.9  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
 Frame = -1

Query: 661 FLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITA 482
           F+S +V  GL++   + P N         +L  F    G+++G  + + S     II+ A
Sbjct: 102 FISLVVLFGLIMKPYSYPRN-------YIFLFLFTALEGLTLGTAITFFSA---RIILEA 151

Query: 481 LLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXTSMSLMTLVNLFMQSH-FLYQAHLYL 305
           +  T  VFV  +A    + +  +            S+ L  L+  F+ S  F+  A    
Sbjct: 152 VFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210

Query: 304 GLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIIL 158
           G ++ CG++LFDT  I+   R   ++F+  +L L++DFI +F R++ IL
Sbjct: 211 GTLVFCGYILFDTYNIL--HRYSPEEFIMSSLMLYLDFINLFIRILQIL 257


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 373 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHAL 209
           +++ +  N  ++  FL+ A +   L+L+  F +    L +E RR  +KD V+  L
Sbjct: 328 LAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDVRKVL 382


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = -1

Query: 772 EPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDN 602
           E   + ++ N+   + ++ + A+  V V++ TR    +   IVG  ++   + TP+N
Sbjct: 745 EKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGNSVVARTVYTPNN 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,595
Number of Sequences: 5004
Number of extensions: 72789
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)