Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19n08f
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.23
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.72
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 29 0.95
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 26 5.0
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 5.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 6.7
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 6.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 8.8
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 25 8.8
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 30.7 bits (66), Expect = 0.23
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Frame = +1
Query: 352 ASNNTVVVEGKH-EEKQDEHGFISRQ-FTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKR 525
++++T V E +H +E+Q E + FT+ + +V++ + ++S + TV P
Sbjct: 72 SASSTPVEEAQHAQEEQQEQTILQEPGFTQTIVEKDADQVDEPLEPIASSALGTVEPPTD 131
Query: 526 PPPNAG-ERIVPITK------TGPAKQPEAASS 603
P+A VP T+ T PA P ++SS
Sbjct: 132 NKPSASTSTAVPTTEARNTSITEPANSPSSSSS 164
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.1 bits (62), Expect = 0.72
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 532 PNAGERIVPITKTGPAKQPE--AASSKPEQQQPREQMVPIVTSP*PP*CRAQRP 687
PN E + P QP AAS++PE QQ + ++P PP R +P
Sbjct: 197 PNPAEHMTGAYVNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTPPPPPPRPSQP 250
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 240 EGELSQAGIFFDDQFDEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARL 413
+ L + + F ++ + E+ YF+ S+ H G RRQ+ G T RL
Sbjct: 17 DSSLDEDSLSFLEELQDPEL--YFKNDTFSSKSSHSDGTVTGDTLRRQSSGATALERL 72
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 511 TAPKRPPPNAGERIVPITKTGPAKQPEAASSKPEQQQPREQM 636
TAP P P+AG VP+ P +S P PR +
Sbjct: 1215 TAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 517 PKRPPPNAGERIVPITKTGPAKQPEAASSKPEQQQPREQMVP 642
P + PP P P K P +A S P P VP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 345 GQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRPGQHVV 488
G+ +E+ GC R G+ R + P+ PV PAD+ G VV
Sbjct: 44 GKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVV 91
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 217 RNSYFRPWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEK 396
R+SYF+ + L E + ++FE IL + + K NN ++ GK +
Sbjct: 188 RSSYFKSKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQL 247
Query: 397 QD 402
D
Sbjct: 248 ND 249
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 228 LQTLEGELSQAGIFFDDQFDERE 296
++TLE ELSQAG+ +Q + +
Sbjct: 442 VRTLENELSQAGVNLQEQIHQND 464
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 285 DEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVH 443
D+ E+ + + ++ + Q EQH R + ++ + S HPPVH
Sbjct: 234 DDAELYRFRSSRQTYPQQPNSQPCEQHPAHANLRRSVSLGSKDYLKSSHPPVH 286
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 487 SSDGVLTVTAPKRPPPNAGERIVPITKTGPAKQPEAASSKPEQQQP 624
+S G + P+R P + ER++P T++ S P P
Sbjct: 543 NSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHSP 588
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 339 DHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQR 470
D QG E+ Q+ TGR +L +H P P RI R
Sbjct: 80 DSLQGFERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIESWR 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,847
Number of Sequences: 5004
Number of extensions: 53442
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -