Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n03r
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 620 YGRLCEWKSGCVVLKVKICSPRW 552
           +G + E K+G V+L    CS +W
Sbjct: 193 FGVVYENKNGSVILDTARCSMKW 215


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 608 CEWKSGCVVLKVKICSPRWKC 546
           C  + G +  K K+C PR KC
Sbjct: 71  CVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 608 CEWKSGCVVLKVKICSPRWKC 546
           C  + G +  K K+C PR KC
Sbjct: 71  CVCRLGYLRNKKKVCVPRSKC 91


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 180 DTVEQHFWLHP 148
           DTV  H W+HP
Sbjct: 535 DTVPIHTWIHP 545


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 213 HRGLRGVTPPRCVRS 257
           HRG+RG   P  VRS
Sbjct: 301 HRGVRGTRVPGIVRS 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,563
Number of Sequences: 438
Number of extensions: 3716
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)