Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n03f
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.40 
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    28   1.6  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.7  

>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -3

Query: 313 GPVYGGQQLAQHHVRRGVPLESRRHHQRRARVQGEHEVDVGEKHGGKTLAAVHGG 149
           G V GG + A H+     P  S    QR      EHE +VGE+H  K    V GG
Sbjct: 5   GNVIGGHKAALHN-----PNVSEETKQREKEYLEEHEGEVGEEH-QKNTGNVRGG 53


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 41   TCREVCCLWCQCSVLSAAQCRGLHARGTVPRGERDISTMNC 163
            +C  V CLW  C ++  ++   +H RG +     +    NC
Sbjct: 1029 SCSVVKCLWASCDMVLPSEEFEMHLRGHLNNIRLNCEVSNC 1069


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
 Frame = -3

Query: 403 RGRVPYDERCGGQVSQQYQQHGAGEQTCG*GPVYGGQQLAQHHVRRGVPLESRRHHQRRA 224
           + R    E    QVS  +    A  +    GP+    +  Q  + + + ++S R  +++ 
Sbjct: 173 KARSSLPENSSEQVSSSFNSRVAHNRNFSDGPIVTNLETDQPRIEKKLTIDSSRSAKKKL 232

Query: 223 RVQGEHEVDVGEKHGG---KTLAAVHGGNVALSSRHCTAR 113
            V+ E      +        T ++ H   + +SS    AR
Sbjct: 233 SVEKERRFSDNKPSSNVSRGTPSSAHSDVIEISSSSAIAR 272


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +2

Query: 542 EVHEHLVPLFSVLGRLHPLPQKLHDLI 622
           E+ E ++P+F+ +G+++ + + L DLI
Sbjct: 558 EIIEQIIPVFTRVGKVYVVLEALFDLI 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,807
Number of Sequences: 5004
Number of extensions: 35809
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)