Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n03f
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043...    30   1.7  
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505...    30   2.3  
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482...    29   3.9  
04_03_0801 - 19828175-19828770,19828913-19828994                       27   5.0  
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713...    29   5.2  
03_02_0855 + 11809135-11809348,11809425-11809501,11809625-118096...    29   5.2  
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    28   6.9  
03_03_0108 + 14514460-14515722                                         28   6.9  
01_06_1010 + 33802947-33803473,33804096-33804273                       28   9.1  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    28   9.1  

>12_02_0761 - 22901121-22901917,22902111-22902707,22904282-22904358,
            22906543-22907135,22907552-22908118,22908431-22908958,
            22909115-22909432,22910622-22910656,22910986-22911301
          Length = 1275

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 47   REVCCLWCQCSVLSAAQCRGLHARGTV-PRGERDISTMN 160
            R++CCL+C C +L +   R L   G V PRG R ++ ++
Sbjct: 1024 RDICCLFC-CGILPSIAMR-LQGNGVVAPRGLRRLTALH 1060


>03_02_0021 -
           5049705-5049713,5049744-5049770,5049877-5049940,
           5050019-5050806,5050888-5051046,5051778-5052419
          Length = 562

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +2

Query: 539 LEVHEHLVPLFSVLGRLHPLPQKLHDLIQEVEKDVPCNA 655
           LE H H  P F +L  LHPLP    DL        P  A
Sbjct: 40  LERHLHTHPFFPLLPSLHPLPLVTPDLADAAPSPSPSAA 78


>04_03_0833 +
           20147242-20147849,20147937-20148081,20148157-20148210,
           20148297-20148388,20148957-20149093,20149210-20149464,
           20149598-20149771,20149863-20149960
          Length = 520

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 298 GQQLAQHHVRRGVPLESRRHHQRRARVQGEHEVDVGE 188
           GQ+   H   RG    +  HH +R R + E   D GE
Sbjct: 2   GQEEGNHSAERGKAAAAAAHHSKRGRDRAEEFSDGGE 38


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 26.6 bits (56), Expect(2) = 5.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 279 CCASCCPPYTGP*PQVCSPAPC 344
           C   CC P   P   VC P PC
Sbjct: 187 CKKPCCSPPPCPWQPVCPPPPC 208



 Score = 20.6 bits (41), Expect(2) = 5.0
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = +3

Query: 249 DSSGTPRRTWCCASCCPP 302
           + + T +   CC  C PP
Sbjct: 140 NKTATDKPKPCCGGCVPP 157


>05_05_0065 -
           22069798-22069890,22070878-22071160,22071240-22071335,
           22071456-22071558,22071633-22071693,22071816-22071887,
           22072315-22072383,22072459-22072482,22073278-22073316,
           22073862-22073951,22074063-22074095
          Length = 320

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 235 QRRARVQGEHEVDVGEKHGGKTLAAVHGG 149
           ++RA++ G H+ D+   H   + AAV+GG
Sbjct: 291 RQRAQMNGRHDEDINHAHSTLSDAAVNGG 319


>03_02_0855 +
           11809135-11809348,11809425-11809501,11809625-11809682,
           11809753-11809840,11809910-11809979,11810171-11810728
          Length = 354

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = -3

Query: 256 LESRRHHQRRARVQGEHEVDVGEKHGGKTLAAVHGGNVALSSRHCTARM*TSALSS 89
           LE +RH Q R   QG++   V EK   +TLA  + G+V L     TA+M  S L S
Sbjct: 168 LEVQRHLQLRIEAQGKYLQSVLEK-AQETLAKQNAGSVGLE----TAKMELSELVS 218


>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 421 DEQNATRGRVPYDERCGGQVSQQYQQHGAGEQTCG*GPVYGGQQLAQHHVRRGVPLESRR 242
           DE+  ++GR   D    G+  ++ ++    E+    G    G+   +   RR    E RR
Sbjct: 31  DEEERSKGRRDRDRDRRGKSKRREEEEEEEEEEGDAGSESSGEDSGERRKRRRKEKE-RR 89

Query: 241 HHQRRAR 221
           H +RR+R
Sbjct: 90  HRRRRSR 96


>03_03_0108 + 14514460-14515722
          Length = 420

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 44  CREVCCLWCQCSVLSAAQCRGLHARGTVPRGERDISTMNCCQRLASVL 187
           C  VC  W   S +SAA  R  HA       +   + ++CC R A VL
Sbjct: 37  CLAVCSAWS--SAVSAAAFRRAHADRPAAVCKATATAIDCCDRDAVVL 82


>01_06_1010 + 33802947-33803473,33804096-33804273
          Length = 234

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 124 SAERRARHFHHELLPASCLRASLPHQPHARPVRGRGAGDGGA 249
           SA RRA      LLP    R++L   P  R   G G G+ GA
Sbjct: 3   SANRRAHMSSLRLLPEKPTRSALSSTPQRR--AGNGGGEAGA 42


>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
            33224174-33224411,33224492-33224642,33224733-33224997,
            33231775-33231820,33232167-33232815,33232883-33233384,
            33235023-33235360,33235466-33235676,33235769-33235992,
            33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 44   CREVCCLWCQCSVLSAAQCRGLHARGTV 127
            CR+ C   C C+  +AA   G  +RG V
Sbjct: 1184 CRQACLRNCSCNAYAAANVSGGDSRGCV 1211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,342
Number of Sequences: 37544
Number of extensions: 335244
Number of successful extensions: 1289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)