Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n03f
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical...    28   8.1  
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 489 EWKSGCVVLKVKICSPRWKCTSIWSHCSPCLVDCILC 599
           EWK  C      + S  W+  S++SH   C VD ++C
Sbjct: 12  EWKKKCSNDSSFLAS--WQGLSVFSHSMCCYVDILIC 46


>AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical
           protein Y75B8A.3 protein.
          Length = 827

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 388 YDERCGGQVSQQYQQHGAGEQTCG*GPVYGG 296
           Y    G Q + QYQ    G+QT   G  YGG
Sbjct: 480 YQNTQGQQTNNQYQYDQGGQQTNNQGAYYGG 510


>AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical
           protein Y37D8A.21 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 283 QHHVRRGVPLESRRHHQRRARVQGEHEVDV 194
           +HH R G    S RHH+   R +  H +D+
Sbjct: 218 RHHDRHGYDRSSSRHHRNDDRRRSAHFLDI 247


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 288 SCCPPYTGP*PQVCSPAPCC 347
           SCCPP     PQ C P P C
Sbjct: 25  SCCPP-----PQCCGPPPAC 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,711
Number of Sequences: 27780
Number of extensions: 241392
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)