Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m24r
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   2.8  
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    27   4.9  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    27   4.9  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 586 ISTLCKKLHDIGVIYKLRGILCFPSHHRILTSDIT*VTS*HHVG 717
           +STL ++   I +  K + +       RILTS+IT V   HH+G
Sbjct: 465 MSTLKRQARSISMNKKTKRLDSLQLKGRILTSNITTVVPNHHMG 508


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 288 QGYYQISQRALICVACLYS*SNSEVF 211
           QG+Y + Q++LI ++ +Y   NS+VF
Sbjct: 495 QGWYPVVQKSLIILSKIYRLVNSQVF 520


>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 213 TLHCLITNTNTRRKSKRAERFGSNPGEPRWRHWRP 317
           TL   +  T  RRK++++      P +P WR + P
Sbjct: 11  TLFLYLLITRWRRKNEKSFIASEEPKQPEWRDYTP 45


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 810 TCELSRAENNLLYAYGE 860
           TC  SR +NNLLY+ G+
Sbjct: 146 TCHYSRQDNNLLYSGGD 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,704,416
Number of Sequences: 5004
Number of extensions: 75354
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)