Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m24f
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    85   8e-18
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    30   0.32 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.56 
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    29   0.74 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.2  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   5.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.1  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   9.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.1  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 85.4 bits (202), Expect = 8e-18
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = +2

Query: 125 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR--ETQYPVAPQSQVYDYI 298
           +GS+ISLISK+DIRY G L  ++ Q+ T+AL  VR  GTE R  +    + P   V+DYI
Sbjct: 5   IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYI 64

Query: 299 LFRGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYP 472
           +FRGSD+KD+R+     + P+ P +   + P  +G+    GQY   +N     Q P P
Sbjct: 65  VFRGSDVKDLRI-EEPATTPSAPPVQPPNDPAIIGSN--SGQY--NWNQAQTAQPPQP 117


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 363 ILPLC--RCLYPQLWVLDQLLGSMWGSLTIQLLDKLHILSIIQWLAFQVEFTTSSTRRA 533
           ILPL     + P+  VL+ +LGS  G + + L +KL ++ I+Q +   V    +  RRA
Sbjct: 671 ILPLMLQALVDPEPAVLESVLGSFSGLIELHLFEKLVVVDILQLVLPLVAVPNAYIRRA 729


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +2

Query: 377 QMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQL 520
           QM     L +   P   +G   HP V QTP P   P    PSG  NQL
Sbjct: 138 QMQSREALLSQQIPPNQIGINAHPAVRQTPQPA--PSPNTPSGNANQL 183


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 471  LSIIQWLAFQVEFTTSSTRRAQCLTSLVEDPNKMHLGQVHLLSVFIGKVQQLTKAFRLVQ 650
            + I+  LA  + +   +    +C    VEDP K H     LLS+       L      V+
Sbjct: 813  VEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLCNEPAFVE 872

Query: 651  ALA 659
            A+A
Sbjct: 873  AVA 875


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +2

Query: 425 YVGQFNHPVVGQTPYPQYH----PMAGFPSGVHNQLNKTSSMLDLIGGGSQQNASRSGTP 592
           YVGQ + PV    P P Y+    P AG P+ +    +     + +  GG   + S     
Sbjct: 111 YVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQGGYNAHYSSPYNN 170

Query: 593 AVGVHRKSPTA 625
              +   +PT+
Sbjct: 171 GYPIGAVNPTS 181


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 442 PSSCWTNSISSVSSNGWLSKWS 507
           P+S   N    V+ NGWL++WS
Sbjct: 349 PNSTVLNEHGYVTYNGWLAQWS 370


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +2

Query: 188 VDPQECTIALASVRSFGTEDRETQYP-VAPQSQVYDYILFRGSDIKDIRVLNNVPSMPND 364
           + P+    +  SV       RE QY     + Q  +  L    ++   ++ N+    P +
Sbjct: 55  IKPRPGPTSALSVEEAKFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKE 114

Query: 365 PAIMQMSVPPTLGTGPAPGQYVGQFNHPV 451
             +    V P   T     +YV Q+N+PV
Sbjct: 115 VEVNSEVVKPDSATTENENRYVNQYNYPV 143


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 626 QLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSSC*AGCELHLESQPLDDTEDMEF 459
           QLL+  ++H Q   L + HF GI    GQ + +      +L+  SQ +++    ++
Sbjct: 332 QLLEVPWQHHQCHPLIKTHFFGIF---GQKIDAIDFYSAKLYKISQQIENARSFDY 384


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 413 APGQY---VGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 526
           AP Q+   +G+FNH  +G         +A    G+H  LN+
Sbjct: 380 APRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHEDLNR 420


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 597 TAGVPDRDAFCWDPPPMRSSI 535
           TA  P  +A CW PP +  S+
Sbjct: 142 TAHEPGCNAVCWSPPSLSGSV 162


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 386  VPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSSMLDLIGGGSQ 565
            +PPT  + P P    G       G  P  Q  P A  P  +    +K + M + +   +Q
Sbjct: 962  LPPTSKSKPFPRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPV-STAQ 1020

Query: 566  QNASRSGTPAV 598
            Q  +R   PA+
Sbjct: 1021 QTQNRPPAPAM 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,223
Number of Sequences: 5004
Number of extensions: 71577
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)