Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19m24f
(772 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 29 0.036
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 26 0.34
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 24 1.8
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 5.5
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 5.5
DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate r... 22 5.5
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 5.5
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 5.5
AB006152-1|BAA24504.1| 178|Apis mellifera inositol 1,4,5-tripho... 22 5.5
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 7.3
AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein. 22 7.3
AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein. 22 7.3
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 7.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 7.3
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 7.3
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 29.5 bits (63), Expect = 0.036
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 365 PAIMQMSVPPTLGT-GPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSSML 541
P I Q S P+ G GP P + P G P P P G P G N + M+
Sbjct: 7 PIITQQSQQPSSGAPGPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMI 65
Query: 542 DLIGG 556
G
Sbjct: 66 SPASG 70
Score = 23.0 bits (47), Expect = 3.1
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 347 PSMPNDPAIMQMSVPPTLGTGPAPG 421
PS P Q PP GP PG
Sbjct: 25 PSPHQSPQAPQRGSPPNPSQGPPPG 49
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.2 bits (55), Expect = 0.34
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 354 CPMILPLCRCLYPQ---LWVLDQLLGSMWGSLTIQLLD 458
CP+IL C+C+Y Q L + +L G + + + D
Sbjct: 176 CPLILGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFD 213
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.8 bits (49), Expect = 1.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -3
Query: 653 RLYQPECFGQLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSS---C*AGCELHLESQPL 483
R+++P+ + SY H +T + L+Q G+ L SS AGC ++LE+ P+
Sbjct: 84 RIWKPDTYFYNGKHSYLHT----ITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPM 139
Query: 482 D 480
D
Sbjct: 140 D 140
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2
Query: 45 KNYPPNKSEQTT 10
K YPP+++EQ+T
Sbjct: 340 KKYPPSETEQST 351
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2
Query: 45 KNYPPNKSEQTT 10
K YPP+++EQ+T
Sbjct: 340 KKYPPSETEQST 351
>DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate
receptor protein.
Length = 322
Score = 22.2 bits (45), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 579 GQVHLLSVFIGKVQQLTKAFRLVQALAA 662
G +HLL + Q++ +AF+ VQ L +
Sbjct: 145 GALHLLFRHFSQRQEVLQAFKQVQLLVS 172
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 22.2 bits (45), Expect = 5.5
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 381 CLYPQLW--VLDQLLGSMWGSLTIQLLDKLHI 470
C + W ++ ++G+ T+ LLDK+HI
Sbjct: 303 CFLFRAWESIIVGMIGAFITCFTMPLLDKMHI 334
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.2 bits (45), Expect = 5.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +1
Query: 166 LRRPTFYCRSSGMYY 210
+ +PTF C+ G +Y
Sbjct: 227 IEQPTFLCKGDGKWY 241
>AB006152-1|BAA24504.1| 178|Apis mellifera inositol
1,4,5-triphosphate recepter protein.
Length = 178
Score = 22.2 bits (45), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 579 GQVHLLSVFIGKVQQLTKAFRLVQALAA 662
G +HLL + Q++ +AF+ VQ L +
Sbjct: 113 GALHLLFRHFSQRQEVLQAFKQVQLLVS 140
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 7.3
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 338 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 493
N PS PN P L + GQ N V PYP HP++G
Sbjct: 62 NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105
>AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 326 IRVLNNVPSMPNDPAIMQMSV 388
I LNNV +DP +M+ S+
Sbjct: 90 ITALNNVIDFLHDPGLMEASL 110
>AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 326 IRVLNNVPSMPNDPAIMQMSV 388
I LNNV +DP +M+ S+
Sbjct: 90 ITALNNVIDFLHDPGLMEASL 110
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 7.3
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 338 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 493
N PS PN P L + GQ N V PYP HP++G
Sbjct: 62 NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 422 QYVGQFNHPVVGQTPYPQYHP 484
QY G +VG++ + YHP
Sbjct: 329 QYFGYLPQDMVGRSLFDFYHP 349
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 422 QYVGQFNHPVVGQTPYPQYHP 484
QY G +VG++ + YHP
Sbjct: 35 QYFGYLPQDMVGRSLFDFYHP 55
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,872
Number of Sequences: 438
Number of extensions: 5313
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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