Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m18f
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   0.31 
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    29   0.96 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.3  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.1  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   5.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.7  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 420  SAHYLFYSLIFMNVVPNLLIL-VPIFLFALLHAASYSLTILDTLGQNSLWVARL 578
            SA   +Y  I  ++VPN+  L  P  ++A   A +  LT   +LG + LW++R+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWISRV 2064


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 102 ARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 218
           AR +I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 316 ARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 374 DLPLAGFHGEVLPGGQRSLFILFTHFHERRAQFVNIGANLFICAATRRFVFLDY 535
           DL +     E+L  G   L I  T F E R+ F     N  +CAA R+FV +DY
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFV-MDY 164


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 450 FMNVVPNLLILVPIFLFALLHAASYSLTIL 539
           F+ V+PN+ +L+P F+   +  + Y L  +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 378 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 476
           S S++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 218 RSSLGGPRNHRAVYHWIR 271
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +3

Query: 429 YLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSR 608
           Y+F  ++F     NL          +L       TI+  LG++ +   RLLIS +    +
Sbjct: 398 YIFLKMVFWTARVNLYQCFITLDSGILEDEE---TIIGNLGESCIQCVRLLISQITILEK 454

Query: 609 NILRAAALAEIV 644
                 AL EI+
Sbjct: 455 RGWLLVALLEII 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,440
Number of Sequences: 5004
Number of extensions: 61501
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)