Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m18f
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...   140   1e-33
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    33   0.17 
AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical ...    32   0.39 
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    29   2.7  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    29   3.6  
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm rece...    29   4.8  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.8  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.8  
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    28   8.3  
U67951-4|AAB07572.1|  398|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score =  140 bits (338), Expect = 1e-33
 Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 2/201 (0%)
 Frame = +3

Query: 165 PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKALLANAATS 338
           PP    ++  ++ AN ++  L+  RV+TV   + Y+ P     P  SA+YK   A+AAT 
Sbjct: 31  PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90

Query: 339 ALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAA 518
           ALRLH RI   + +L+  F+ R  +EDS HYL YS++F+   P  +  +P+ ++A LHA 
Sbjct: 91  ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149

Query: 519 SYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLFPVVLIMALFGHCGLMS 698
           ++   IL   G  S  + + L      Q++N L   A +EI L P+++ +   G   L+ 
Sbjct: 150 TFMTKILRETGHTSSIIPK-LEQFTAHQTQNALGIIACSEIFLVPLLVSLIFSGKGSLLL 208

Query: 699 PFVYYYFVTWRYASRRNPYTR 761
           PF YY F++ RYASRRNP TR
Sbjct: 209 PFAYYRFLSLRYASRRNPSTR 229


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 285 NNPVSAFYKALLANAATSAL-RLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNV 461
           + P++A Y  L   A+   L +L   +  R ISL R+F+   +++ + H +F S+     
Sbjct: 201 SQPLAAVYFGLSVYASKLGLQKLKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIF 260

Query: 462 VPNLLILVPIFLFALLHAASYSLTILDTL 548
             + +I +P  +  +L A       L TL
Sbjct: 261 FLSFIIWIPSNMSYILTAMCTQHGSLSTL 289


>AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical
           protein W06D4.2 protein.
          Length = 290

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
 Frame = +3

Query: 393 FMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVA 572
           F +  F    + YLF   + +++ P  + L P F+FALL       T L +L + S ++A
Sbjct: 149 FSSTLFFGIFSGYLFGPRM-LSLAPTTIFLPP-FMFALLFDNGILPTPLVSLNRQSFFIA 206

Query: 573 RLLIS--LVEFQSRNILRAAALAEIVLFPVVLIMALFGHCGLMSPFV 707
              IS  +  F +  +L + ++  I LF +V +  L+ H  ++  FV
Sbjct: 207 FASISVFITTFLASIVLGSFSIV-ISLFNIVHVTGLYIHFQVIMQFV 252


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 335 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 448
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 628 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 665


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 335 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 448
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 577 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 614


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 335 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 448
           F           R L LA FHG+ +P G+   F + TH
Sbjct: 575 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 612


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 438 YSLIFMNVVPNLLILVPIFLFALL--HAASYSLTILDTLGQ-NSLWVARLLISLVEFQSR 608
           + L F+++  NLLI +P+F FA     ++ Y +   + +     L+VA    SL     R
Sbjct: 12  FCLSFVSICLNLLIFIPVFRFAFFGKRSSIYLIAFFNIISDLQQLFVACFHSSLSIIFGR 71

Query: 609 NILRAAALAEIVLF 650
            +L  A +    +F
Sbjct: 72  YVLSGARINSFSVF 85


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 432 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 599
           LFY+L+F  ++P +L+ +P  L  L      S+     L   S+++  +L  L  F
Sbjct: 260 LFYALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFLYPILDPLPNF 315


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 122 NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 241
           + YGR  ++SRR +  ++ PS  S+ H   N R+SL  P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 438 YSLIFMNVVPNLLILVPIFLFALLHAAS--YSLTILDTLGQ-NSLWVARLLISLVEFQSR 608
           + L F+++  NLLI +P+F FA     S  Y +   + +     L+VA    SL     R
Sbjct: 12  FCLSFVSICLNLLIFIPVFRFAFFGKKSSIYLIAFFNIISDLLQLFVACFHSSLSIIFGR 71

Query: 609 NILRAAALAEIVLF 650
            +L  A +  + +F
Sbjct: 72  YVLTGARINNLSVF 85


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 332 DFSAAATSKNSSTRDLPLAGFHGEV 406
           +F   +TS     +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 101 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 205
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 101 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 205
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 247 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 432 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 599
           LFY+L+F  ++P +L+ +P     L+     S+ +   L   S+++  +L  L  F
Sbjct: 245 LFYALVFQTLIPVILMHIPASFGFLVSIFGNSIQLFGQLPTFSIFLFPMLDPLPNF 300


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 101 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 205
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 101 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 205
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 470 FVNIGANLFICAATRRFVFLDYP*YSWSK 556
           FV++G ++FI  A   F+F D P  SW++
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444


>U67951-4|AAB07572.1|  398|Caenorhabditis elegans Hypothetical
           protein C47C12.4 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 560 VVGGSSAHLPGRVPVAEHPPGRGARRDRAVPGRTHHG-IVRSLRLDESVRILLLRDVEV 733
           VVG   A   G+    +   GRG   D A  GR H   ++  +R+ E  + LLLR+V+V
Sbjct: 203 VVGAKDA---GKTVFTQSLAGRGMA-DVAQIGRRHSPFVINRVRVKEESKYLLLREVDV 257


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 432 LFYSLIFMNVVPNLLILVP 488
           LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,493
Number of Sequences: 27780
Number of extensions: 353497
Number of successful extensions: 1381
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)