Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m16r
         (900 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    33   0.016
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.34 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            27   1.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   1.0  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.4  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   9.6  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   9.6  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 32.7 bits (71), Expect = 0.016
 Identities = 29/138 (21%), Positives = 58/138 (42%)
 Frame = -3

Query: 844  QTKKKDLAAEISRLESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDK 665
            QT  +    EI  L  ++E    K I+EA+  ++      V + +  K    K  R R+ 
Sbjct: 733  QTSFQQTKEEIEELNKKIETLQ-KTIVEAR-ETQTQCSAKVKDLQA-KIADGKGHREREL 789

Query: 664  KSEQEKIREEEIKLQDKENVHGARNIEIQTITKRLEEKNLKIFTVPSDGDCLYKAVSHQL 485
            KS +E ++  + K ++          + +T+   +EE    I T       L + ++   
Sbjct: 790  KSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQIAALQ 849

Query: 484  QLVKQETVSVDELREKVS 431
            Q + + + + DE+   V+
Sbjct: 850  QRLVEVSGTTDEMTAAVT 867



 Score = 26.6 bits (56), Expect = 1.0
 Identities = 19/97 (19%), Positives = 46/97 (47%)
 Frame = -3

Query: 838 KKKDLAAEISRLESELEIRHNKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKS 659
           K+K   A  +  +SE+E++H+++++  K  + ++ +    E +   TKV     + ++  
Sbjct: 406 KQKSAEATTAIKQSEMELKHSQQLLRDKQKNMNSSDAAYLEDKRKLTKVEGQIGQLER-- 463

Query: 658 EQEKIREEEIKLQDKENVHGARNIEIQTITKRLEEKN 548
           E +    EE  ++       A   E++ +   L+ +N
Sbjct: 464 ELQSTGYEEGSMETLAGRRQALQQEVRGLRSELDRRN 500


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = -3

Query: 757 KLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKLQDKENVHGARNIEIQ 578
           KL  EH    + +E R  + + +  +R ++++  +++ RE+  K Q ++        E Q
Sbjct: 442 KLEEEHRAARLREEERAREAREAAIEREKERELREQREREQREKEQREKEQREKEERERQ 501

Query: 577 TITKRLEEK 551
              K   E+
Sbjct: 502 QREKEQRER 510


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
 Frame = -3

Query: 778  NKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKI--REEEIKLQDKENV 605
            +KE    K+ S H    ++DE   IK ++ +  R +    E+EKI  R E  +  + E  
Sbjct: 988  DKEKFRLKVISHHG--KIMDEVDKIKAQIEQDIRDQPNAPEEEKIRYRNESYEKINSELQ 1045

Query: 604  HGARNIEIQTITKRLEEKNLKI-----FTVPSDGDCLYKAVSHQLQLVKQETVSVDEL 446
               RNI  Q I   ++     I     + V +    L+  +   ++ + QE ++++ +
Sbjct: 1046 ELYRNITSQ-IPFAIDPSKFGILVNDAYIVTASHKVLFDGIDWNMERIPQEELTLESI 1102


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
 Frame = -3

Query: 778  NKEIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKI--REEEIKLQDKENV 605
            +KE    K+ S H    ++DE   IK ++ +  R +    E+EKI  R E  +  + E  
Sbjct: 989  DKEKFRLKVISHHG--KIMDEVDKIKAQIEQDIRDQPNAPEEEKIRYRNESYEKINSELQ 1046

Query: 604  HGARNIEIQTITKRLEEKNLKI-----FTVPSDGDCLYKAVSHQLQLVKQETVSVDEL 446
               RNI  Q I   ++     I     + V +    L+  +   ++ + QE ++++ +
Sbjct: 1047 ELYRNITSQ-IPFAIDPSKFGILVNDAYIVTASHKVLFDGIDWNMERIPQEELTLESI 1103


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 772  EIMEAKLSSEHNLEPMVDETRVIKTKVSKAQRRRDKKSEQEKIREEEIKLQDK 614
            EI  +KL  EH+L+ + D  ++ K+  S A+  + K    EKI+   +K   K
Sbjct: 980  EIDYSKL--EHHLKNLSDPDQIKKSGDSLAKELQSKLDTLEKIQTPNMKAMQK 1030


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 186 IINGGPSNSVPCSIQSGPTACITF 257
           +I G P++++P   +   T C+TF
Sbjct: 76  VIRGQPADALPKLFKEWGTTCLTF 99


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = -3

Query: 340  YCHKIMNTK--DWGGQLELRALSNILKCPINVIQ----AVGPDCIEQGTE 209
            YCH+  + K        ELR L    K  I ++Q    A   +CI+QG +
Sbjct: 1253 YCHRFFDRKRIHRKSYFELRELKRAEKTIIRLVQNEVYATEYECIKQGQQ 1302


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,300
Number of Sequences: 2352
Number of extensions: 14075
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97160985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)