Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m16r
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    27   0.18 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       26   0.54 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   8.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   8.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
 Frame = -3

Query: 682 QRRRDKKSEQEKIREEEIKLQDKENVHGARNIEIQTITKRLEEKNLKIFTVPSDGDC--- 512
           +++ D       +REE   +       G     I  +    E  N+ +   P   +    
Sbjct: 196 KQQPDLNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLFESANISLDEPPLGKNLNLS 255

Query: 511 LYKAVSHQLQLVKQETVS-VDELREKVSNYIRDNKDD 404
           L+ +++H L   + ET   V E R+ V NY  +NK D
Sbjct: 256 LHASLNHTLTKDQPETYELVKEWRDFVDNYAEENKRD 292


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 679 RRRDKKSEQEKIREEEI 629
           RRR KKSE +KIR   I
Sbjct: 232 RRRSKKSEDDKIRRSSI 248


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 563 PFGNSLYFNVPSSMNI 610
           P  ++LY+N PSS N+
Sbjct: 259 PVTHNLYYNSPSSENL 274


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 703 KTKVSKAQRRRDKKSEQEKIREEE 632
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 595 RNIEIQTITKRLEEKNLKI 539
           +NI++  +TK LE KN  I
Sbjct: 91  KNIKLYGLTKNLEIKNYNI 109


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 93  LFVFYEVFSLTEIRLV 140
           L VFYEVF   E+ ++
Sbjct: 46  LLVFYEVFRYLELAMI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,592
Number of Sequences: 438
Number of extensions: 3982
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)