Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19m16f
(780 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT021404-1|AAX33552.1| 411|Drosophila melanogaster LD11219p pro... 29 7.2
AF152419-1|AAD38390.1| 411|Drosophila melanogaster WD-40 protei... 29 7.2
AF117606-1|AAD13113.1| 411|Drosophila melanogaster lissencephal... 29 7.2
AF098070-1|AAC83821.1| 409|Drosophila melanogaster Lis1 homolog... 29 7.2
AE013599-2210|AAS64845.1| 411|Drosophila melanogaster CG8440-PF... 29 7.2
AE013599-2209|AAO41383.1| 411|Drosophila melanogaster CG8440-PE... 29 7.2
AE013599-2208|AAO41382.1| 411|Drosophila melanogaster CG8440-PD... 29 7.2
AE013599-2207|AAO41381.1| 411|Drosophila melanogaster CG8440-PC... 29 7.2
AE013599-2206|AAO41380.1| 411|Drosophila melanogaster CG8440-PB... 29 7.2
AE013599-2205|AAF58050.1| 411|Drosophila melanogaster CG8440-PA... 29 7.2
>BT021404-1|AAX33552.1| 411|Drosophila melanogaster LD11219p
protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AF152419-1|AAD38390.1| 411|Drosophila melanogaster WD-40 protein
LIS1 protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AF117606-1|AAD13113.1| 411|Drosophila melanogaster lissencephaly-1
protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AF098070-1|AAC83821.1| 409|Drosophila melanogaster Lis1 homolog
protein.
Length = 409
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 95 RPPEKFSLTGHRASITRVIFHPIFALMVS 123
>AE013599-2210|AAS64845.1| 411|Drosophila melanogaster CG8440-PF,
isoform F protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AE013599-2209|AAO41383.1| 411|Drosophila melanogaster CG8440-PE,
isoform E protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AE013599-2208|AAO41382.1| 411|Drosophila melanogaster CG8440-PD,
isoform D protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AE013599-2207|AAO41381.1| 411|Drosophila melanogaster CG8440-PC,
isoform C protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AE013599-2206|AAO41380.1| 411|Drosophila melanogaster CG8440-PB,
isoform B protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
>AE013599-2205|AAF58050.1| 411|Drosophila melanogaster CG8440-PA,
isoform A protein.
Length = 411
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 184 KPTEKNSVNDHH--FTEIIFHPISSLIIS 264
+P EK S+ H T +IFHPI +L++S
Sbjct: 97 RPPEKFSLTGHRASITRVIFHPIFALMVS 125
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,578,377
Number of Sequences: 53049
Number of extensions: 465850
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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