Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m15r
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   302   4e-83
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   256   4e-69
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    32   0.11 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.4  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   7.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   7.2  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   7.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   9.5  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  302 bits (741), Expect = 4e-83
 Identities = 137/243 (56%), Positives = 169/243 (69%)
 Frame = -2

Query: 793 CKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEP 614
           C G  L HFMGCSTFS+YTVV +IS+  +   APLD VCLLGCG+ TGYGAA  TA ++ 
Sbjct: 137 CNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKE 196

Query: 613 GSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQ 434
           G + A+F                 A RI G+D+NP+K   A  FG  +F+NP D   PIQ
Sbjct: 197 GDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQ 256

Query: 433 QVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTG 254
            VL+  TDGGL++TF+C GNV  MR+ALEACHKGWG S++IGVAAAG+EISTRPFQLVTG
Sbjct: 257 DVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQLVTG 316

Query: 253 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 74
           R W+G AFGG K R  +P LV EYL+ KL +D+++TH  PLKEINEAF  MH G  I+ V
Sbjct: 317 RVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTV 376

Query: 73  VDM 65
           + +
Sbjct: 377 LSI 379


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  256 bits (626), Expect = 4e-69
 Identities = 120/243 (49%), Positives = 160/243 (65%)
 Frame = -2

Query: 793 CKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEP 614
           C+ + L H+MGCS+FSQYTVV +ISL  ++ +APL  +CLLGCGV TG+GA  ++AKVE 
Sbjct: 134 CRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVES 193

Query: 613 GSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQ 434
           GS  A+                  A+RII +DIN DK   AKKFG  +F++     K + 
Sbjct: 194 GSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKV-KDLV 252

Query: 433 QVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTG 254
           Q ++D+TDGG++Y F+C GNV  M+  L+ CHKGWG   +IGVAAAG+ +  RPF +VTG
Sbjct: 253 QYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPFLVVTG 312

Query: 253 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 74
           R   G+AFGG K R  +P  VDEY++    +DE++T+  PLK IN+AF  MH GK IR V
Sbjct: 313 RQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCV 372

Query: 73  VDM 65
           VDM
Sbjct: 373 VDM 375


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 535 RIIGVDINPDKFEVAKKFGVNEFVNP 458
           R++G+D +PD  + A++ G+N +V P
Sbjct: 57  RVVGIDASPDMIKAARELGLNAYVIP 82


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 234 AVPFQVRPVTSWNGRVLISSPAAATPMIT 320
           +VP+   PVTS N  +  S+P  +TP+ T
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 529



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 234 AVPFQVRPVTSWNGRVLISSPAAATPMIT 320
           +VP+   PVTS N  +  S+P  +TP+ T
Sbjct: 560 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 588


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 718  LCKVAEAAPLDKVCLLGCGVPTGY 647
            +CKV E A L   CLL C   T +
Sbjct: 979  ICKVREIASLSLTCLLDCSKMTTF 1002


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 328 GVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGG 224
           G  V+IG +  G E++    + +T  T  G   GG
Sbjct: 110 GALVVIGTSLGGHELTNGGKEFITSATSLGALLGG 144


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 601 RNLILVQLWQYSRRLHNL*VHRIPANKLYLMEQPLQLYREKFLEQLC 741
           R+L  V   +   R H L +H++   K +  +Q ++  R+  L+ LC
Sbjct: 210 RDLDAVACHERIARYHILCIHQLCEKKQFSAQQEVEQLRKGILQSLC 256


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = -1

Query: 308 CSCCW---RRDQHSSIPTCYRSHLEGNSFWR 225
           C  CW   + D +   P C R + E N  WR
Sbjct: 42  CRFCWHHIKEDLNGRCPACRRLYTEENVQWR 72


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 439  IQQVLVDLTDGGLEYTFECIGNVGTMRAALEACH 338
            I Q + DLT G  +   +C+ +     A+L  CH
Sbjct: 3280 IVQFITDLTVGEFQLCLKCLLSFSQHAASLRICH 3313


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 279  VLISSPA-AATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVK 419
            VL++S A  A    T + H    A +A +++P+F + SK+  +  S+K
Sbjct: 1000 VLVNSEADTALRAKTTSQHLKQSAMAAKVVLPSFIVTSKISKQTKSIK 1047


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 367 TMRAALEACHKGWGVSVIIGVA-AAGEEIS 281
           ++ AA E  H+GW +   IG A A G+ IS
Sbjct: 227 SLNAAFEHVHQGWRIMFGIGAAPALGQLIS 256


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 130 KEINEAFHLMHAGKSIRAVVDM*FLRKNIY 41
           K +N  F L H  K+ +   DM ++RKN Y
Sbjct: 444 KLLNLTFELQHLRKTSKNDEDMSYVRKNSY 473


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 172  SSPSTHLQALVH-FLYFCNLQKLFPSRCD 255
            SSPS+ L+     F Y CN+ KL+  + D
Sbjct: 914  SSPSSDLEVKQQAFTYVCNISKLYVYKSD 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,450
Number of Sequences: 5004
Number of extensions: 65178
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)