Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m08f
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    29   0.50 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    28   1.5  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   2.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   4.7  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   4.7  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   8.2  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   8.2  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 33/135 (24%), Positives = 59/135 (43%)
 Frame = +3

Query: 228 VVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 407
           V+I HG  G+     +   K  F    D ++  +D      S    A ++ + +      
Sbjct: 23  VLIFHGLLGSKRNWRSLAKK--FSCKLDRDIYAIDQRCHGDSP-CVAPLSYSAMALDAFQ 79

Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 587
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S   W  ++ R     A
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133

Query: 588 QYVEVIHTDGSGVNK 632
            + ++I  D + + K
Sbjct: 134 YFRKMIQIDEANITK 148


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +3

Query: 132  YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
            Y+  + +++T+T     TG  T     P       +DIV +  G++GT T+T+       
Sbjct: 848  YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 906

Query: 294  FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
              TS     +V+   +   +T +  V   TG  G+  +T
Sbjct: 907  --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 943



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +3

Query: 132  YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
            Y+  + +++T+T     TG  T     P       +DIV +  G++GT T+T+       
Sbjct: 892  YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 950

Query: 294  FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
              TS     +V+   +   +T +  V   TG  G+  +T
Sbjct: 951  --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 987



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +3

Query: 132  YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
            Y+  + +++T+T     TG  T     P       +DIV +  G++GT T+T+       
Sbjct: 936  YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 994

Query: 294  FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
              TS     +V+   +   +T +  V   TG  G+  +T
Sbjct: 995  --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1031



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +3

Query: 132  YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
            Y+  + +++T+T     TG  T     P       +DIV +  G++GT T+T+       
Sbjct: 980  YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1038

Query: 294  FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
              TS     +V+   +   +T +  V   TG  G+  +T
Sbjct: 1039 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1075



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +3

Query: 132  YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
            Y+  + +++T+T     TG  T     P       +DIV +  G++GT T+T+       
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1082

Query: 294  FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
              TS     +V+   +   +T +  V   TG  G+  +T
Sbjct: 1083 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1119



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 132  YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTI 272
            Y+  + +++T+T     TG  T     P       +DIV +  G++GT T+T+
Sbjct: 1068 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTV 1120


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +3

Query: 126 YYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTS 305
           YY++ A   SI ++   F +GN  +   + +  I   +   +  + T I PIV      S
Sbjct: 94  YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153

Query: 306 GDYNVIVVDWSSFSLSTYSTAV 371
           G Y  +   ++S  L +  T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 601 LFTPTDLVSTKNGLGVA 651
           +FTP+D VS+ N LGV+
Sbjct: 249 IFTPSDAVSSANSLGVS 265


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 586 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 497
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = +3

Query: 123 YYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLT 302
           YY          +  E HF    D    F +   + +    +   A++ + P+  +  +T
Sbjct: 650 YYPVFQPAPTEFSYPEKHFYFAVDNFNVFISKEVVRLFKTLYETIASSLVTPVTPNKLVT 709

Query: 303 SGDYNVIVVDWSSFSLS 353
           S   NV+ +   +FSLS
Sbjct: 710 SDYKNVLKIRTRTFSLS 726


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 156 SNFSVHCYSNNIYLNFQIAP 97
           +NF+  C   N +LNFQI P
Sbjct: 417 NNFTSTCAFENSHLNFQITP 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,570
Number of Sequences: 5004
Number of extensions: 61892
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)