Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19m01r
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 1.5
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 1.9
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 25 1.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 2.6
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 3.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 3.4
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 3.4
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 3.4
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 24 4.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 24 4.5
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 24 5.9
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 23 7.9
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 23 7.9
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 7.9
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.9
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 23 7.9
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 160 EAPWLRCLSSLCKLNQLASKRSFC 231
+AP L LS++C + + KR FC
Sbjct: 967 DAPALSLLSAVCAYDYASDKRKFC 990
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 1.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 220 RSFCYCSC 243
RSFCYCSC
Sbjct: 158 RSFCYCSC 165
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 1.9
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = -1
Query: 301 LLSGCGNQENFNLFL-RIKLNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEA 125
LL+G Q+ N + +I L K + + WRQ GLT + + + + + +
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLTTLEQGHKYERDKTQKFLLSKASAS 320
Query: 124 LKRDESHVRVTPWANGRP---AHLQKAVPK*RRNS*PTM 17
+ HV+ P +QK VP R+ + PTM
Sbjct: 321 YDKQLRHVKSFNQTTSAPFQVRDIQKIVP--RKPATPTM 357
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 113 RISRQSHTLGQRTTCTPPESCSKVKK 36
++ ++S +T TPP+ CS +KK
Sbjct: 36 QMKKESLAASVKTPSTPPKECSHLKK 61
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 120 NVTNLTSESHLGPTDDLHTSRKLFQS 43
+V+ L+S SHL PT +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 169 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 62
K + S + FR RD+ + P +N P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 3.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 23 WLTIPSSLWNSFLEVCR 73
WL+IP+S W++F + +
Sbjct: 507 WLSIPASRWSTFYDASK 523
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -3
Query: 257 ENKIKQEQ*QNERLEASWFNLHKLLKHRSQGASQVTKARI 138
E+K+ + + ++L A+W KLL + +++ +ARI
Sbjct: 378 ESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARI 417
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 4.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -1
Query: 262 FLRIKLNKNNNKMSAWRQAGLTYINYSNIAAKV 164
+ + L N N +SAW G Y+ N A +
Sbjct: 360 YFKRALQLNRNYLSAWTLMGHEYVELKNTHAAI 392
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.2 bits (50), Expect = 4.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 260 FENKIKQEQ*QNERLEASWFNLHKLLKHRSQGASQVT 150
F K+K+EQ + LE +L LLK R + ++T
Sbjct: 308 FAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLT 344
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 120 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 31
++TNLT D L T LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 295 SGCGNQENFNLFLRIKLNKNNNKMSAWR 212
S NQ++ F++ KL K N+ WR
Sbjct: 338 SALANQKHLLRFIKAKLRKCPNEKVIWR 365
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 23.4 bits (48), Expect = 7.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 2 LMIFMHGWLTIPSSLWNSFLE 64
L F+ GW+ + S+ W S L+
Sbjct: 9 LFQFLFGWIVLSSAQWLSVLD 29
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 107 SRQSHTLGQRTTCT 66
SRQS TL RT CT
Sbjct: 132 SRQSGTLNNRTLCT 145
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 290 LWKSGKFQFIFENKIKQEQ*QNERLEAS 207
+WK K Q + E +++Q+ ER+ +S
Sbjct: 78 MWKKEKEQLLKEKELRQKALDKERMVSS 105
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 124 TPLLEILALVTCEAPWLRCLSSLCKLN 204
TP + + VT + PWL L CK N
Sbjct: 207 TPGTILPSTVTVKTPWLSVLPFNCKKN 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,783
Number of Sequences: 5004
Number of extensions: 22135
Number of successful extensions: 82
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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