Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m01r
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   8e-10
04_04_1383 - 33144047-33144603,33145554-33147129                       28   1.3  
02_04_0349 + 22222091-22222639,22222718-22223695                       27   4.0  
04_04_1092 + 30817641-30818171                                         26   5.2  
04_01_0024 + 344621-344830,344926-345705                               26   6.9  
03_06_0635 + 35210755-35210855,35210938-35211088,35211171-352113...    26   6.9  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = -1

Query: 217 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 74
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>04_04_1383 - 33144047-33144603,33145554-33147129
          Length = 710

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 262 FLRIKLNKNNNKMSAWRQAGLTYIN--YSNIAAKV 164
           FLR+  N  N  + AW Q+ L  +N  Y+N +  V
Sbjct: 216 FLRLDANHFNGSLPAWNQSSLKLLNVSYNNFSGPV 250


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 43  TLEQLSGGVQVVRWP 87
           TLE LSGGV ++ WP
Sbjct: 406 TLESLSGGVPMLSWP 420


>04_04_1092 + 30817641-30818171
          Length = 176

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 151 VTCEAPWLRCLSSLCKLNQLASKRSFCYCS 240
           + CE P    +    + N+  +  +FCYCS
Sbjct: 128 IPCEVPAFEAILKAVEKNKKDNAAAFCYCS 157


>04_01_0024 + 344621-344830,344926-345705
          Length = 329

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 178 IAAKVLRRSLKQEFRAEALKRDESHVRV-TPW 86
           +   V RR +KQE RAEA K  +    V  PW
Sbjct: 273 VTVLVERRMVKQEHRAEAYKLYQKRTSVWIPW 304


>03_06_0635 +
           35210755-35210855,35210938-35211088,35211171-35211341,
           35211864-35212043,35213174-35213303,35213580-35213749
          Length = 300

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 133 LEILALVTCEAPWLRCLSSLCKLNQLASKRS--FCYCSC 243
           L+I  L+  EA WL  +  L K+N   S R    C  SC
Sbjct: 128 LDIPKLLHNEAAWLLAVKELQKINSFKSPREKLSCIMSC 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,214
Number of Sequences: 37544
Number of extensions: 142269
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)