Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19m01f
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   2.0  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   2.0  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   2.7  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   2.7  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   3.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   4.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   4.7  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   4.7  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   4.7  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    24   6.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   6.2  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    24   6.2  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   6.2  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   8.2  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 151  EAPWLRCLSSLCKLNQLASKRSFC 80
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 342 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 166
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 91  RSFCYCSC 68
           RSFCYCSC
Sbjct: 158 RSFCYCSC 165


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 210 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 323
           QSH L    + TP  +   ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 198 RISRQSHTLGQRTTCTPPESCSKVKK 275
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 NVTNLTSESHLGPTDDLHTSRKLFQS 268
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 142 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 249
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 288 WLTIPSSLWNSFLEVCR 238
           WL+IP+S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 54  ENKIKQEQ*QNERLEASWFNLHKLLKHRSQGASQVTKARI 173
           E+K+   + + ++L A+W    KLL    +  +++ +ARI
Sbjct: 378 ESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARI 417


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 49  FLRIKLNKNNNKMSAWRQAGLTYINYSNIAAKV 147
           + +  L  N N +SAW   G  Y+   N  A +
Sbjct: 360 YFKRALQLNRNYLSAWTLMGHEYVELKNTHAAI 392


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  FENKIKQEQ*QNERLEASWFNLHKLLKHRSQGASQVT 161
           F  K+K+EQ   + LE    +L  LLK R +   ++T
Sbjct: 308 FAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLT 344


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 357 FFLNSVIYCTILHKLIVDDF 298
           F+LN V  C I+H+++ + F
Sbjct: 392 FWLNQVELCKIIHRMLTEVF 411


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 10  LLSGCGNQENFNLFL-RIKLNKNNNKMSAWRQAGLT 114
           LL+G   Q+  N +  +I L K  + +  WRQ GLT
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 191 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 280
           ++TNLT        D L T   LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,064
Number of Sequences: 5004
Number of extensions: 26614
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)