Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19l13r
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 547 HGRQGTHEGLRGGRARRCRQSAHQQEAVQLG 455
           +G Q +H GL    +    QS  QQ++V  G
Sbjct: 804 YGHQQSHHGLHINSSPSSVQSGQQQQSVLQG 834


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 272 LESSDKPQSIEMNSQRQFRVAIT 340
           L+ +DK Q I+ N+   FR AIT
Sbjct: 480 LKPNDKSQVIKQNTWTVFRDAIT 502


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 514 HVTLHEFPGVHAVAHVLELLGGV 582
           H+ +H+  GVH +  +  +LGG+
Sbjct: 322 HLKIHDTCGVHNLHGMPGILGGI 344


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 486 VPISKKQYSWEDTA 445
           V + KKQY+W  T+
Sbjct: 381 VSLDKKQYTWRHTS 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,736
Number of Sequences: 438
Number of extensions: 3289
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)