Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19l13f
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 85 1e-17
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 69 6e-13
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 43 4e-05
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 38 0.002
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 34 0.027
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.3
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 28 1.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 5.4
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 9.4
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 9.4
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/79 (46%), Positives = 54/79 (68%)
Frame = +3
Query: 84 TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
T +EV T + ++ + VYD+ KFLD HPGG EVL+++AG+DAS FEDVGHS DA
Sbjct: 7 TVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDA 66
Query: 264 RELMKGYVVGELVDADKVP 320
+EL++ + +G L+ + P
Sbjct: 67 QELLEKFYIGNLLRTEDGP 85
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 69.3 bits (162), Expect = 6e-13
Identities = 25/76 (32%), Positives = 52/76 (68%)
Frame = +3
Query: 72 LRQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGH 251
++ + +E+ + + + +I+ VYDV F D+HPGG +++++ AG+DA++ ++D+GH
Sbjct: 3 VKYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGH 62
Query: 252 SMDARELMKGYVVGEL 299
S+ A EL++ +G+L
Sbjct: 63 SIAADELLEEMYIGDL 78
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +3
Query: 84 TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
T++E+A KT + I VY+V +L HP G + +++ AG+DA+ F ++
Sbjct: 75 TKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVNE 134
Query: 264 RELMKGYVVGELV 302
L+K VG LV
Sbjct: 135 EALLKTSFVGFLV 147
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 37.9 bits (84), Expect = 0.002
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 108 KTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFED--VGHSMDARELMKG 281
++ T L +I+ +V+D+ F EHPGG +L + GKDA+ F H+ A L+
Sbjct: 369 QSKTRPLVLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGGVYDHTNGAHNLLST 426
Query: 282 YVVGELVDADKVPISK 329
Y V + +V + K
Sbjct: 427 YRVAVVRGGMEVEVWK 442
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 84 TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
T +E+A + + I VY+V +L HP G + ++ +G DA++ + ++
Sbjct: 73 TAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPYLKHHDWVNE 132
Query: 264 RELMKGYVVGELV 302
EL+K VG LV
Sbjct: 133 EELLKTSFVGYLV 145
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -1
Query: 614 NKVRNCAPL-PASHHTPHT 561
N VR+C P P HH PHT
Sbjct: 155 NHVRSCPPFPPTQHHHPHT 173
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 186 GHEVLINVAGKDASEEF-EDVGHSMDARELMKGYVVGELVDADKVPISKKQYSWEDTAKT 362
GH ++ V + + F +D +L+KG +VG D+ ++ +S KQ +D+++
Sbjct: 1167 GHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEI 1226
Query: 363 SETEA 377
++T A
Sbjct: 1227 TKTFA 1231
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 673 GKKDFC*FLLHA-MSYLNFKLPYTFYQFSINYNFFNV 780
G+ C FL + + Y NFK P +FS N FF V
Sbjct: 77 GRCILCNFLRRSVLHYFNFKSPVGAIEFSPNGKFFAV 113
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 412 WASRSPCSTHIYSDSCLLSQHGTVVASSFLYFVVYRMILECS 537
W +P + +D L ++ T+V S+ +YF+ +IL C+
Sbjct: 139 WCYVTPVGAALIADQ-FLGRYNTIVCSAVIYFIGI-LILTCT 178
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 456 LPVIATRNCRCEFISILCGLSD 521
LP++A N +C F+SI C + D
Sbjct: 378 LPILARLNQKCYFMSIPCCVHD 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,355
Number of Sequences: 5004
Number of extensions: 46405
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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