Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19l13f
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0065 + 461182-461271,462222-462288,462408-462664 84 1e-16
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 83 3e-16
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 80 2e-15
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 68 7e-12
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 59 3e-09
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 57 2e-08
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 57 2e-08
09_02_0530 + 10285844-10287217 49 4e-06
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 38 0.007
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 33 0.26
10_01_0015 - 187905-188432 31 1.4
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 30 1.8
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 30 1.8
04_01_0360 - 4720997-4721812 30 2.4
10_08_0194 + 15645571-15645978 29 4.2
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 7.4
02_02_0248 - 8267332-8268276,8268338-8269288 28 7.4
01_04_0139 - 16570515-16571141 28 7.4
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 28 9.7
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +3
Query: 81 YTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMD 260
YT +EVA + + II VY+V KFL++HPGG +VL++ GKDA+++FEDVGHS
Sbjct: 9 YTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTT 68
Query: 261 ARELMKGYVVGELVDADKVPISKK 332
AR +M Y VG+ +D +P K
Sbjct: 69 ARAMMDEYYVGD-IDTSTIPARTK 91
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 82.6 bits (195), Expect = 3e-16
Identities = 44/112 (39%), Positives = 63/112 (56%)
Frame = +3
Query: 60 MQPGLRQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFE 239
M G Y+ EV+ + II VYDV F++EHPGG EVL+ GKDA+ +F
Sbjct: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
Query: 240 DVGHSMDARELMKGYVVGELVDADKVPISKKQYSWEDTAKTSETEASFVNSW 395
D+GH+ A+ELM Y +GE VDA VP +K Y +++ +A+ +W
Sbjct: 61 DIGHTATAKELMPQYCIGE-VDASTVP-AKPAYRVVSEDASAKPDAASQGAW 110
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 79.8 bits (188), Expect = 2e-15
Identities = 38/83 (45%), Positives = 54/83 (65%)
Frame = +3
Query: 84 TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
T +EV+ T + II VY+V KFL++HPGG +VL++ KDA+++FEDVGHS A
Sbjct: 8 TLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHSTTA 67
Query: 264 RELMKGYVVGELVDADKVPISKK 332
R +M Y VG+ +DA +P K
Sbjct: 68 RAMMDEYYVGD-IDATTIPTKVK 89
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 68.1 bits (159), Expect = 7e-12
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 81 YTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINV-AGKDASEEFEDVGHSM 257
++ +V + + +I VYDV KFL++HPGG +VL++ A DA+E FEDVGHS
Sbjct: 13 FSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGHST 72
Query: 258 DARELMKGYVVGELVD 305
A +M Y++G + D
Sbjct: 73 SAISMMNNYLIGSIKD 88
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/75 (41%), Positives = 43/75 (57%)
Frame = +3
Query: 78 QYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSM 257
QYT EV T I+ VYD FL +HPGG + ++ AG D +EEF+ + HS
Sbjct: 515 QYTMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSD 573
Query: 258 DARELMKGYVVGELV 302
AR L++ Y +GEL+
Sbjct: 574 KARGLLEMYRIGELI 588
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +3
Query: 75 RQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHS 254
+Q+T EV + ++ VYD FL +HPGG + ++ AG D +EEF+ + HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 255 MDARELMKGYVVGELV 302
A+ L+ Y +GEL+
Sbjct: 601 DKAKALLDTYRIGELI 616
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +3
Query: 75 RQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHS 254
+Q+T EV + ++ VYD FL +HPGG + ++ AG D +EEF+ + HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 255 MDARELMKGYVVGELV 302
A+ L+ Y +GEL+
Sbjct: 601 DKAKALLDTYRIGELI 616
>09_02_0530 + 10285844-10287217
Length = 457
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +3
Query: 69 GLRQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVG 248
G+R + +E+ + + I VYDV ++ HPGG L+ +AG+DA++ F
Sbjct: 15 GVRMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFA-AY 73
Query: 249 HSMDARELMKGYVVGELVDADKVPIS 326
H AR L+ ++VG L D P S
Sbjct: 74 HPPSARPLLGRFLVGRLEDYTVSPAS 99
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 75 RQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEF 236
R + +EV KT ++ VY++ ++ HPGG ++L+ AGKD++ F
Sbjct: 140 RLISLEEVKQHKTGDSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 33.1 bits (72), Expect = 0.26
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 144 IVYDVHKFLDEHPGGHEVLIN 206
+VYDV +++EHPGG E+L N
Sbjct: 40 MVYDVTSYVEEHPGGDEILNN 60
>10_01_0015 - 187905-188432
Length = 175
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 257 GRQGTHEGLRGGRARRCRQSAHQQEAVQLGG 349
GR+ EG RGGR RR R++ AV GG
Sbjct: 97 GRRRRSEGRRGGRCRRGRRARRTASAVGRGG 127
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 248 AHVLELLGGVLAGDVDEHLVSAGMLVQKFMHIVDDIIDDEERLRCGL 108
A+V+E++ G L D E + AG + + MHI D ++ R CG+
Sbjct: 597 ANVIEMIPGPLL-DRMEIITIAGYITDEKMHIARDYLEKNTREACGI 642
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -1
Query: 242 VLELLGGVLAGDVDEHLVSAGMLVQKFMHIVDDIIDDEERLRCGLTIGDLVPGVLSEP 69
V LG +LA + +E SA V+ F +++D ID+ L+ I PG+ S+P
Sbjct: 352 VFTSLGDILASEFEEARFSA---VEAFKSLIEDCIDESMILQGITQIKSRHPGIRSDP 406
>04_01_0360 - 4720997-4721812
Length = 271
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 263 QGTHEGLRGGRARRCRQSAHQQEAVQLG 346
+G +GLRG R R+C +A ++E+ +LG
Sbjct: 187 RGDGDGLRGRRRRQCSVAARERESKRLG 214
>10_08_0194 + 15645571-15645978
Length = 135
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 263 QGTHEGLRGGRARRCRQSAHQQEAVQLG 346
+G +G+RG R R+C +A ++E+ +LG
Sbjct: 99 RGNGDGVRGRRRRQCSVAARERESKRLG 126
>08_01_0519 -
4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 153 DVHKFLDEHPGGHEVLINVAGKDASEEFED 242
DV K +DEHPG E N++GK + E+ D
Sbjct: 366 DVSKTVDEHPGKSE---NLSGKVSDEDLGD 392
>02_02_0248 - 8267332-8268276,8268338-8269288
Length = 631
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 305 CRQSAHQQEAVQLGGHREDLRDRGLLRQLMEVPGAAGPRAHLA 433
CR+ H L R+ L +RG+ R + E P AA P HLA
Sbjct: 509 CREIKHA-----LRDQRQRLDERGVARWISENPNAAQPGDHLA 546
>01_04_0139 - 16570515-16571141
Length = 208
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 263 QGTHEGLRGGRARRCRQSAHQQEAVQLG 346
+G +G+RG R R+C +A ++E+ +LG
Sbjct: 104 RGDGDGVRGRRRRQCLVAARERESKRLG 131
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 248 AHVLELLGGVLAGDVDEHLVSAGMLVQKFMHIVDDIIDDEERLRCGL 108
A+V+E++ L D E + AG + + MHI D ++ R CG+
Sbjct: 584 ANVIEMIPNPLL-DRMEIIAIAGYITDEKMHIARDYLEKNTREACGI 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,406
Number of Sequences: 37544
Number of extensions: 313551
Number of successful extensions: 1042
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -