Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19l13f
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-6|CAB01732.2|  134|Caenorhabditis elegans Hypothetical pr...    96   3e-20
AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical ...    75   4e-14
Z81052-7|CAJ58492.1|  103|Caenorhabditis elegans Hypothetical pr...    74   1e-13
AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical ...    48   1e-05
AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical ...    48   1e-05
Z74038-3|CAA98498.2|   89|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical pr...    39   0.005
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    39   0.005
Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical pr...    33   0.31 
DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.      31   1.2  
AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical ...    31   1.2  
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    29   3.8  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    29   3.8  

>Z78539-6|CAB01732.2|  134|Caenorhabditis elegans Hypothetical
           protein C31E10.7 protein.
          Length = 134

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 44/96 (45%), Positives = 61/96 (63%)
 Frame = +3

Query: 72  LRQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGH 251
           L+Q T  E+A+  T      +I N V+DV KFLDEHPGG EVL+  AG D +E FEDVGH
Sbjct: 4   LKQITLKEIAEHNTNKSAWLVIGNKVFDVTKFLDEHPGGCEVLLEQAGSDGTEAFEDVGH 63

Query: 252 SMDARELMKGYVVGELVDADKVPISKKQYSWEDTAK 359
           S DAR +   Y++GE+V +++   S  +  W+ T +
Sbjct: 64  STDARHMKDEYLIGEVVASERKTYSYDKKQWKSTTE 99


>AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical
           protein W02D3.1 protein.
          Length = 141

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 3/83 (3%)
 Frame = +3

Query: 72  LRQYTRDEVADS--KTATETLFI-IDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFED 242
           LR  + DEV+    + A ++ +I I   VYDV KFL+EHPGG EV+  +AGKDA+  F D
Sbjct: 4   LRVISLDEVSKHNWEDADQSCWIVISGKVYDVTKFLNEHPGGEEVITQLAGKDATVGFLD 63

Query: 243 VGHSMDARELMKGYVVGELVDAD 311
           VGHS DA E+   Y++G+L ++D
Sbjct: 64  VGHSKDAIEMANEYLIGQLPESD 86


>Z81052-7|CAJ58492.1|  103|Caenorhabditis elegans Hypothetical
           protein D2023.1b protein.
          Length = 103

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/85 (41%), Positives = 52/85 (61%)
 Frame = +3

Query: 84  TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
           TR EV    +  +   I+ N VYDV KF+D HPGG E+L+  AG DA++ FE VGHSM A
Sbjct: 7   TRSEVNMHCSEDDCWIIVGNYVYDVTKFVDLHPGGPEILLEFAGGDATDAFESVGHSMCA 66

Query: 264 RELMKGYVVGELVDADKVPISKKQY 338
           R ++  + +G L + ++    + +Y
Sbjct: 67  RMMLTKFKIGSLPEDERPDFIQAEY 91


>AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3b protein.
          Length = 516

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 144 IVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDARELMKGYVVGELV-DADKVP 320
           IVYDV K+LD HPGG   L+  AG+DA+  F      ++   ++K  VVG  + D  K+P
Sbjct: 42  IVYDVTKYLDFHPGGIPELLRGAGRDATPLFNQYHAWVNYESMLKACVVGPFIGDLTKLP 101


>AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3a protein.
          Length = 552

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 144 IVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDARELMKGYVVGELV-DADKVP 320
           IVYDV K+LD HPGG   L+  AG+DA+  F      ++   ++K  VVG  + D  K+P
Sbjct: 78  IVYDVTKYLDFHPGGIPELLRGAGRDATPLFNQYHAWVNYESMLKACVVGPFIGDLTKLP 137


>Z74038-3|CAA98498.2|   89|Caenorhabditis elegans Hypothetical
           protein F58B4.2 protein.
          Length = 89

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +3

Query: 48  TARTMQPGLRQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDAS 227
           TA+T +  L++YTR +V    T  +   +  + VY++  + ++HPGG  +L   AGKD +
Sbjct: 2   TAKT-EDNLKEYTRSQVEQHCTHDDLWLLFRDKVYNMTPYFNQHPGGLAIL-RYAGKDVT 59


>Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical
           protein H13N06.4b protein.
          Length = 178

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 30  HAQHARTARTMQPGLRQYTRDEVAD-SKTATETLFIIDNIVYDVHKFLDEHPGGHEVLIN 206
           HA+    +      L+ Y ++EV    K A        + VYDV  F+  HPGG ++L+ 
Sbjct: 65  HAKDETMSEKKLENLQIYKQEEVKKHGKDADRIWVTYKDGVYDVTDFIAMHPGGDKILLA 124

Query: 207 V-AGKDASEEFEDVGHSMDARELMKGYVVGELVDADKVP 320
             A  D          + +  E+++GY +G+L D   VP
Sbjct: 125 AGAAVDPFWALYSQHKTKEVLEILEGYRIGKL-DVKDVP 162


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 30  HAQHARTARTMQPGLRQYTRDEVAD-SKTATETLFIIDNIVYDVHKFLDEHPGGHEVLIN 206
           HA+    +      L+ Y ++EV    K A        + VYDV  F+  HPGG ++L+ 
Sbjct: 65  HAKDETMSEKKLENLQIYKQEEVKKHGKDADRIWVTYKDGVYDVTDFIAMHPGGDKILLA 124

Query: 207 V-AGKDASEEFEDVGHSMDARELMKGYVVGELVDADKVP 320
             A  D          + +  E+++GY +G+L D   VP
Sbjct: 125 AGAAVDPFWALYSQHKTKEVLEILEGYRIGKL-DVKDVP 162


>Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical
           protein C25A1.5 protein.
          Length = 316

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 135 IDNIVYDVHKFLDEHPGGHEVLINVAGKDASE 230
           +D   YD+  F  +HPGG +VL  +AG++  E
Sbjct: 15  LDGQYYDIADFAPKHPGGAKVLNRLAGEEIGE 46


>DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.
          Length = 690

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 39  HARTARTMQPGLRQYTRDEVADSKTATETLFI--IDNIVYDV 158
           H  TA   QP +RQ+ R  +A  KTA   + +  I+N++Y V
Sbjct: 443 HLATAEAFQPSIRQWKR--IASMKTARRGIAVASIENVIYAV 482


>AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical
           protein W02G9.2 protein.
          Length = 690

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 39  HARTARTMQPGLRQYTRDEVADSKTATETLFI--IDNIVYDV 158
           H  TA   QP +RQ+ R  +A  KTA   + +  I+N++Y V
Sbjct: 443 HLATAEAFQPSIRQWKR--IASMKTARRGIAVASIENVIYAV 482


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 239 LELLGGVLAGDV---DEHLVSAGMLVQKFMHIVDDIIDDEERLRC-GLTIGDLV 90
           L L G + A  V   D H V    + +    + DD++D  +R+RC  LT+G L+
Sbjct: 601 LYLNGAITADRVPFEDNHTVVYEFVSKALSILEDDVVDSRDRVRCLHLTVGTLL 654


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 239 LELLGGVLAGDV---DEHLVSAGMLVQKFMHIVDDIIDDEERLRC-GLTIGDLV 90
           L L G + A  V   D H V    + +    + DD++D  +R+RC  LT+G L+
Sbjct: 606 LYLNGAITADRVPFEDNHTVVYEFVSKALSILEDDVVDSRDRVRCLHLTVGTLL 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,248
Number of Sequences: 27780
Number of extensions: 280578
Number of successful extensions: 870
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)