Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19l03f
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.13
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 29 0.24
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.24
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 1.7
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 26 1.7
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 25 2.9
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 3.8
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 24 5.1
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 23 8.8
SPBC216.06c |swi1||replication fork protection complex subunit S... 23 8.8
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 23 8.8
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.5 bits (63), Expect = 0.13
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 208 VLVYRTEKYQKLKVEVERQSKKLEKRKE 291
+L EK +KLKVEVER+ + L +++E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEE 1101
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 28.7 bits (61), Expect = 0.24
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 120 LTILQNVERFSLNSF-HLYLHCVLRRRLNMGLSLQNGEISKTESGSRTTE*KIRET*GSS 296
LT LQ +L+S H+ + L +R L K E R E K +E GSS
Sbjct: 156 LTKLQIAVEDTLDSLPHIEMEIDLLKRAQAELMKSEDSPEKDEETLRREERKQKE--GSS 213
Query: 297 WRLTRQTKKK 326
WRL T+ K
Sbjct: 214 WRLDLNTRDK 223
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.7 bits (61), Expect = 0.24
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 238 KLKVEVERQSKKLEKRKEAHGDSLDRQKK 324
++ + +E++ KK K KEA G+S ++KK
Sbjct: 446 EMDIVIEKKKKKSSKLKEADGESSKKEKK 474
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 1.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 325 FFFVCLVSLHELPYVSLIFYSVVRLPLS---VFDISPFCRLRPMLSLLLRTQCR 173
+ CLVS + SL Y+ + + + + +S FC +R LS +L + CR
Sbjct: 321 YTLACLVSWRD--NASLFNYAAIIISFNHQMIPHVSQFCHVRSYLSAILPSVCR 372
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 31 LSTVSTLCRFILKTFEIINLNSF*V-YLSLD*RFCKMWSD 147
+ST++ L + + E +NL + Y+ L RFCK WSD
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSD 311
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 2.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 214 VYRTEKYQKLKVEVERQSKKLEKRKEAHGDSLDRQKK 324
++++++ + K E S KLE RK AH + ++++
Sbjct: 113 LHQSKQALRAKAIAESSSTKLESRKSAHNAKVKQRQR 149
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 211 LVYRTEKYQKLKVEVERQSKKLEKRKE 291
L ++ EKY L E+E K EK +E
Sbjct: 230 LYHKQEKYSLLMQEIENAKKLYEKDRE 256
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 172 ICTAFLGEGLTWVLVYRTEKYQ 237
I T + EG+ WVLV R + Q
Sbjct: 1373 IVTHYRSEGINWVLVVRQKNTQ 1394
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 229 KYQKLKVEVERQSKKLEKRKEA 294
+YQ+ K E ER + EKR A
Sbjct: 208 QYQEQKTEAERYQSQKEKRDSA 229
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 66 QNIRNNKFKFILSVSFIRLTILQNVERFSLNSFHLYLHCVLRRR 197
++ + F ++ +++ + + +L+ +E+FS S YL+ RRR
Sbjct: 483 KHFKTQSFGYLDAITELTIVLLKELEKFS--SAKQYLYVKKRRR 524
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 232 YQKLKVEVERQSKKLEKRKEA 294
Y+KLK ++ ++ ++ EK KEA
Sbjct: 608 YKKLKKDLSKRLERAEKLKEA 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,467
Number of Sequences: 5004
Number of extensions: 19897
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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