Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19l03f
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0946 - 29075600-29076229 53 6e-08
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 29 0.65
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 29 1.1
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 28 1.5
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 28 2.0
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 27 2.6
03_03_0099 + 14400651-14400936,14403705-14403731,14403956-144042... 27 3.5
06_01_0540 - 3871347-3872072,3872784-3872997,3873088-3873320,387... 26 6.1
06_01_0530 - 3833291-3834016,3834728-3834941,3835032-3835264,383... 26 6.1
04_03_0811 - 19909128-19912214 26 6.1
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 26 8.0
07_01_0463 + 3502708-3503535 26 8.0
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 26 8.0
>03_05_0946 - 29075600-29076229
Length = 209
Score = 52.8 bits (121), Expect = 6e-08
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 139 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDS 306
+ DSL +V IS TA L E ++W+L+YRT Y L+ +ER S+KL+ K +S
Sbjct: 10 YGDSLSVVAISGATAVLCEAISWLLIYRTATYNSLRATIERHSRKLDAMKAGASNS 65
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 29.5 bits (63), Expect = 0.65
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 208 VLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSLDRQKK 324
+L Y TEK + V SKK EK+K+ GD+ +KK
Sbjct: 180 MLTYLTEKLNRAVEAVAPGSKKDEKKKDKGGDADGGEKK 218
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 235 QKLKVEVERQSKKLEKRKEAHGDSLD 312
Q++ +E ERQ++++E E GD++D
Sbjct: 148 QRIMMEFERQNERMEMTSEVMGDAID 173
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 226 EKYQKLKVEVERQSKKLEKRKEAHGDSLDR-QKK 324
EK K K EVE++ +K E+ A GD L QKK
Sbjct: 394 EKSWKPKYEVEKEKEKAEEAAAAAGDGLSEFQKK 427
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 151 LLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVER-----QSKKLEKRKEAHGDSLD 312
++ V +SIC + LT + ++RT+K + + S++L +HGD LD
Sbjct: 445 IIAVVVSICALAIILALTGMYIWRTKKTKARRQGPSNWSGGLHSRELHSEGNSHGDDLD 503
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 202 TWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSLDRQK 321
T VLV TEK L EVE L+ K+ D L++++
Sbjct: 1505 TEVLVQDTEKVDSLTAEVEELKTSLQSEKQ-RADDLEKKR 1543
>03_03_0099 +
14400651-14400936,14403705-14403731,14403956-14404236,
14404423-14404512,14405660-14406100
Length = 374
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 171 RDENY*ERIAPHFAK 127
RD NY RIAPHF K
Sbjct: 76 RDHNYLPRIAPHFLK 90
>06_01_0540 -
3871347-3872072,3872784-3872997,3873088-3873320,
3873409-3873561
Length = 441
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 153 LNSFHLYLHCVLRRRLNMGLS 215
L+ FH+ LH V RRLN+ L+
Sbjct: 419 LDMFHMILHSVWLRRLNLRLN 439
>06_01_0530 -
3833291-3834016,3834728-3834941,3835032-3835264,
3835353-3835505
Length = 441
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 153 LNSFHLYLHCVLRRRLNMGLS 215
L+ FH+ LH V RRLN+ L+
Sbjct: 419 LDMFHMILHSVWLRRLNLRLN 439
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 117 RLTILQNVERFSLNSFHLYLHCVLRRRLNMGLSLQNGEISKTES 248
+L+ +E L S H H VL +MG SLQN +S+ +S
Sbjct: 812 KLSSFDKLEDCKLRSCHHMKH-VLEYAYSMGQSLQNVRVSQLQS 854
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 208 VLVYRTEKYQKLKVEVERQSKKLEKRKEAHG 300
+L+ R + + KVE+ER K +EAHG
Sbjct: 245 ILIDRLRQLETEKVELERTVVHETKEREAHG 275
>07_01_0463 + 3502708-3503535
Length = 275
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 220 RTEKYQKLKVEVERQSKKLEKRKEAHGDSLDRQKK 324
+ E+ +K K E + KK EK+K+ GD + +K+
Sbjct: 119 KKEEGKKKKDGDEEEGKKKEKKKDKDGDEKEGKKE 153
>04_04_0416 + 25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 217 YRTEKYQKLKVEVERQSKKLEK 282
Y K QK+ +E+ER +LEK
Sbjct: 1136 YALRKLQKVVIEIERNEARLEK 1157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,569,646
Number of Sequences: 37544
Number of extensions: 101515
Number of successful extensions: 297
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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