Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19l02r
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0587 - 34921535-34922041,34922579-34922689 33 0.15
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 31 0.62
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 31 1.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 31 1.1
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 30 1.4
08_02_0595 + 19097299-19097462,19097490-19097910 30 1.9
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 29 2.5
07_01_0975 + 8223269-8224354 29 3.3
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595... 29 3.3
04_01_0446 - 5815231-5816202 29 3.3
03_05_0630 + 26260159-26260272,26260520-26260894 29 4.4
04_03_0081 - 10829429-10829758 28 5.8
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 28 7.6
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 28 7.6
>03_06_0587 - 34921535-34922041,34922579-34922689
Length = 205
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 82 SVEGLGKSDS-GSRDDR-GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQ 246
S +G G+ D G RDDR G G +G DR G+ + R+ D YG G + + +
Sbjct: 143 SGDGGGRGDRYGGRDDRYGGGGGGGGRYGSDRGGDRYSGRSRDGGGYGGGGGDRYSR 199
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 441 EPISVGPALVDTYE--PISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSE 292
EP P+++ T + P + VE APVTV DG I N+ PS+
Sbjct: 178 EPYDAPPSVISTEQLNPAAEPVVGVEAAPVTVAEPDGVTTSAITANIPSPSD 229
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 154 RQARNCWYPYHPGSRCHSSRDPQLSQLTD 68
R+ R C++P+ PG R + P++ +L D
Sbjct: 521 RRPRRCFFPFSPGVRVGAMSSPEIQKLAD 549
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 429 VGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAAD 280
VG + + E ++ GP EGA + VTGADG+ L +I +P E+ D
Sbjct: 142 VGVSEHGSLEHVNPGPGDGEGATIPVTGADGSGL---LIEGAQPVEMDVD 188
>04_03_0941 - 20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 30.3 bits (65), Expect = 1.4
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 3/165 (1%)
Frame = +1
Query: 67 YQ*AGSVEGLGKSD-SGSRDDRGTNNYGLDDFGEDRAGELHG-FRNVDFRKYGSGENNNF 240
Y +G G +D SGS G N D+G + G + D K S ++ +
Sbjct: 777 YSGSGGYNKSGNNDYSGSGG--GYNKSSAGDYGSEYKDSSTGDYGRGDEYKKSSSDDYDG 834
Query: 241 GQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS 420
G + + N +G G+ G + D D G S D + G+ N S + G NKS
Sbjct: 835 GYKKSSS--NDDGYGGS-GYSKPSTGDYDSGKNASNTDGYGGSGYNKSSTDNSESGYNKS 891
Query: 421 RSDGDGLVGVNXSRSNRDGHVC-VNKSRSXRXGFVGVNKSRSNGD 552
+ G+ G ++S+ D + NKS + G G GD
Sbjct: 892 GT-GEYGSGGGYNKSSTDNYESGYNKSGTGDYGSGGGYDKSDAGD 935
>08_02_0595 + 19097299-19097462,19097490-19097910
Length = 194
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 316 DDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNXSRSNRDGH 480
DD + S A D +G +G G+ GV GDG+ GV N+DG+
Sbjct: 93 DDAAQPSNKGAADGFQGDQGDGSQ---GVQGVGSQGIQGDGVQGVQGGGLNQDGN 144
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 29.5 bits (63), Expect = 2.5
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Frame = +1
Query: 109 SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG----ENNNFGQRLFG--NVLN 270
S ++ + YG FG G G D SG + + G+R N +
Sbjct: 1326 SNPKNGDDNSGYGRGGFGRGNRGRGRGRNFGDSGSSWSGGSYRNDESRGERSEDRWNTRD 1385
Query: 271 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSD 429
+G G GR D ++G+ +GD++ T+ +GR NRD N +R+D
Sbjct: 1386 SDGGRGR-GRGHFGRGDRNQGNNYGSGDNNDRTWGSGRGNRDQDGCKNWNRND 1437
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 338 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGTYVSTRAGPTXMG 517
PS + + A S GPT G +GP+ G+ GP+ G GP+ G
Sbjct: 264 PSGSPSGSPAGSPAGGPTAGGP----ASGPSSYGAASGPAEGPSSSGAASGPAEGPSPSG 319
Query: 518 S*VSTRAGPTEMGS 559
+ GP+ GS
Sbjct: 320 A-AGPAEGPSSYGS 332
>04_04_1224 +
31858110-31858338,31859180-31859301,31859398-31859507,
31859661-31859725,31859940-31860004,31860387-31860632,
31861212-31861313,31861484-31861534,31862015-31862105,
31862777-31862841
Length = 381
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 423 PALVDT-YEPISVGPAIVEGAPVTVTGADGTPLVQI 319
PA + T Y P+ VGPA + +P VTG +V +
Sbjct: 290 PARIGTPYHPMQVGPAYISPSPQPVTGGKFNHVVYV 325
>04_01_0446 - 5815231-5816202
Length = 323
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 355 SHRGTFNNGRSNR-DGLVGVNKSRSDGDGLVGVNXSRSNRDG 477
SH+ + R+ R G G + SDG G VG SRS DG
Sbjct: 101 SHKRDIDGARAQRWSGGSGWGRCPSDGSGGVGWGRSRSGSDG 142
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 367 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNXSRSNRDG 477
TF++ +S RD + G+N DG + VN ++S R G
Sbjct: 55 TFSSEQSMRDAIEGMNGKELDGRNIT-VNEAQSRRSG 90
>04_03_0081 - 10829429-10829758
Length = 109
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 262 VLNINGISGNLGRTVH-VDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDG 438
+ ++ GI + R V D + S S D +G +G G+ GV GDG
Sbjct: 30 IADVPGIGSSKDREVQQAPDGAAQPSDKSVADGSQGVQGDGSQ---GVQGVGSHGIQGDG 86
Query: 439 LVGVNXSRSNRDGHV 483
G N+DG++
Sbjct: 87 SQGFQGGNLNQDGNM 101
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 417 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIA 256
+V T + G A+ + + GAD V+I++ + I D +DIA
Sbjct: 78 IVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIA 131
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 283 SGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGVNXS 459
SG G HV + L EG A G + +G ++R VG +KSRS G GL
Sbjct: 12 SGGGGGACHVSNVL-EGEAKKPGADSKDARKDGSADRGVSRVGSDKSRSHG-GLDSKKDV 69
Query: 460 RSNRDGH 480
RDG+
Sbjct: 70 VIQRDGN 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,314
Number of Sequences: 37544
Number of extensions: 317171
Number of successful extensions: 1209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -