Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19k23r
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    56   6e-09
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    50   3e-07
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    47   4e-06
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   6.0  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   7.9  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 6/177 (3%)
 Frame = -3

Query: 549 APAGSPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNIGPFAAAGFN--VSYSDNGLF 376
           APA SP+           G     KW   N+ LAKA G    + A        YSD  L 
Sbjct: 256 APAASPELFVLSSIL---GGDAAVKWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLL 312

Query: 375 GVVLSVPKDEXXXXXXXXXXXXKTSLSA----DAIKAGKNQLKTQVLNEADTGSSLAESL 208
            VV+S    +              SLS+    D +K+G    KT+ L+  +  +    ++
Sbjct: 313 SVVISGSCPKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLSAFEPVT--LNAI 370

Query: 207 AAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 37
           +A  L + S  S   I+   D+++   IS+ VS+      S  AVGNL  +PY DEL
Sbjct: 371 SASSLVSASKGSDAFIS-GFDKVTPASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
 Frame = -3

Query: 618 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN-SPLAK 445
           + G E+R ++     A++A+AV+G     P           +GN       + + S    
Sbjct: 247 FVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLS 306

Query: 444 AIGNIGPFAAA--GFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIK 280
            I      A +   F+ SYSD GL+G+ L   ++ + +             T  +   ++
Sbjct: 307 TIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVATRAEVE 366

Query: 279 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 100
             K QL+  +L   D+ +++AE +  Q L TG   S  ++   I QI+  D+++  S   
Sbjct: 367 RAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMI 426

Query: 99  KNK-ISIGAVGNL 64
            +K I++ AVG++
Sbjct: 427 WDKDIAVSAVGSI 439


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 22/254 (8%)
 Frame = -3

Query: 780 NDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEA--STYY 613
           N I++ S++ +      P    +   G  QE A  I + L   L SS     EA  S Y 
Sbjct: 207 NGITATSIREYLKYFYRPEHLTLAYAGIPQEIAKEITKELYGHLPSSSLPPLEAIPSHYT 266

Query: 612 GG--ELRKEIGG------DLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN- 460
           GG   ++K          +  HV +A++G P   P           LG G     G    
Sbjct: 267 GGFMGIKKSEAPPVPYQQEFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGK 326

Query: 459 ---SPLAKAIGNIGPFAAA--GFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT--- 304
              S L   + N  P+      FN SY+D+GLFG+ +++  D                  
Sbjct: 327 GMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVL 386

Query: 303 SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQ-GLYTGSVRSAVDIAKDIDQISNND 127
           S++++  +  KNQLK+ +L   ++     E L  Q     G   +  ++ + ID ++ +D
Sbjct: 387 SVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSD 446

Query: 126 ISQAVSNAAKNKIS 85
           +S+         +S
Sbjct: 447 LSRVARRVLTGNVS 460


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 600 LILHHNK*MLQPEKHLMRSILGFEQSMQPFPE 695
           +IL H+K  L P + L   ++ FE+ +Q +PE
Sbjct: 458 IILSHDK--LDPIRGLRSKLISFERFLQKYPE 487


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 132 YWISGRYPWRCQQQSEQSRCISLALLMIRQATILCRLH-LTLVSSTDF 272
           Y +S  + W CQ  S   R +S A L     ++ C +H   ++ S +F
Sbjct: 304 YCLSQLFNWSCQNISSYQRLVSFAHL-YSYTSVKCLVHWFQIMRSAEF 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,417
Number of Sequences: 5004
Number of extensions: 53332
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)