Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k23r
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 55 6e-08
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 55 8e-08
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 50 2e-06
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 46 3e-05
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 46 3e-05
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 34 0.13
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 32 0.51
03_05_1146 - 30735010-30735216,30735336-30735650,30740169-307401... 31 1.6
04_04_1202 - 31700414-31700854 30 2.1
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 55.2 bits (127), Expect = 6e-08
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 9/204 (4%)
Frame = -3
Query: 636 QAEASTYYGGELRKEIGG-DLAHVALAVQGAPAGSPQXXXXXXXXXXLG--NGPVTKWGA 466
+A + + G E+R E L H A+A +G+ +P LG N +
Sbjct: 276 EANPAIFTGSEVRVEQPEMPLTHFAIAFKGSSWANPSSIPLMVIQSILGTWNRSIGVGNC 335
Query: 465 DNSPLAKAIGNIGPFAAA--GFNVSYSDNGLFGVVLSVPKD---EXXXXXXXXXXXXKTS 301
S LA+ I N G A + FN +Y D GLFG+ D +
Sbjct: 336 SGSALARGISN-GNLAESMIAFNTNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAFE 394
Query: 300 LSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDIS 121
+S + +NQLK+ +L D ++++E+ Q L G V +++ ID + + +
Sbjct: 395 VSETEVARARNQLKSALLLHIDGSTAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVM 454
Query: 120 QAVSNAAKNK-ISIGAVGNLAFVP 52
+ + +K I++ AVG L +P
Sbjct: 455 ETAKDFIIDKDIALAAVGPLTNLP 478
>01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 54.8 bits (126), Expect = 8e-08
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 14/260 (5%)
Frame = -3
Query: 774 ISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGGEL 601
+++ L+ F ++N T R + G + I + L + STY GGE
Sbjct: 239 LNTNVLEYFLAENYTAPRIVLAATGVDHDELVSIAEPLLSDMPGVTGPAKPKSTYVGGEY 298
Query: 600 RKEIGGDLAHVALA--VQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNI- 430
R+ VALA V G + LG G WG L ++ ++
Sbjct: 299 RRTADSSNTDVALAFEVPGGWLKEKEFVTVSVLQTLLGGGGTYSWGRHGKGLHSSLNHLA 358
Query: 429 GPF----AAAGFNVSYSDNGLFGVVLS-----VPKDEXXXXXXXXXXXXKTSLSADAIKA 277
F + A F +S+ G+FG+ S VPK + +
Sbjct: 359 NEFDQIRSIAAFKDVHSNTGIFGIHTSTDAAFVPKAIDLATRELTSLATPGKVDQTQLDR 418
Query: 276 GKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAK 97
K K+ +L ++ +S E + Q L G + + K +D ++ DI+
Sbjct: 419 AKATAKSAILMNLESKASATEDMGRQILAFGERKPVEHLLKAVDGVTLKDITALAEKIIS 478
Query: 96 NKISIGAVGNLAFVPYIDEL 37
+ +++ + GN+ VP D +
Sbjct: 479 SPLTMASHGNVLNVPTYDSV 498
>01_06_0648 - 30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 50.0 bits (114), Expect = 2e-06
Identities = 56/263 (21%), Positives = 99/263 (37%), Gaps = 16/263 (6%)
Frame = -3
Query: 792 QRGFNDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEAST 619
Q + + S L+ F ++N T R + G + I + L L S + S
Sbjct: 226 QSAIHRLDSSILEEFIAENYTAPRMVLAASGVEHDELVSIAEPLLSDLPSVKRPEEPKSV 285
Query: 618 YYGGELRKEIGGDLAHVALAVQGAPAG----SPQXXXXXXXXXXLGNGPVTKWGAD---N 460
Y GG+ R + D H+ALA + P G G G + G +
Sbjct: 286 YVGGDYRCQADSDKTHIALAFE-VPGGWFEEKTAIIVTVLQMLMGGGGSFSAGGPGKGMH 344
Query: 459 SPL-AKAIGNIGPFAA-AGFNVSYSDNGLFGVVLS-----VPKDEXXXXXXXXXXXXKTS 301
S L + + N + + FN Y+ +GLFG+ + K
Sbjct: 345 SRLYLRILNNYHQIESFSAFNSIYNHSGLFGIHATTSPNFASKAVDLAAGELLEVATPGK 404
Query: 300 LSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDIS 121
++ + + K K+ VL ++ +E + Q L G + KD++ I+ NDIS
Sbjct: 405 VTQEQLDRAKQATKSAVLMNLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDIS 464
Query: 120 QAVSNAAKNKISIGAVGNLAFVP 52
+ +++ + G++ VP
Sbjct: 465 STAKKIISSPLTLASWGDVIHVP 487
>05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 46.4 bits (105), Expect = 3e-05
Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 16/261 (6%)
Frame = -3
Query: 780 NDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGG 607
N + +L+ F S+N T R + G + + + L L S + S Y GG
Sbjct: 282 NRLDVATLEEFVSENYTAPRMVLAASGIEHDELVSVAEPLLSDLPSVKRPEEPKSVYVGG 341
Query: 606 ELRKEIGGDLAHVALAVQGAPAGSPQ----XXXXXXXXXXLGNGPVTKWGADNSP----L 451
+ + H+ALA + P G Q G G + G
Sbjct: 342 DYHCQADSTSTHIALAFE-VPGGWRQEKTAMIVTVLQVLMGGGGSFSTGGPGKGMHSWLY 400
Query: 450 AKAIGNIGPFAA-AGFNVSYSDNGLFGVVLSVPKD-----EXXXXXXXXXXXXKTSLSAD 289
+ + N G + + F+ Y+++GLFG+ + D ++ +
Sbjct: 401 LRVLNNYGQIESFSAFSSIYNNSGLFGIHATTNPDFVSSAVDLAARELHEVATPGKVTQE 460
Query: 288 AIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVS 109
+ K K+ VL + ++ +E + Q L G + K +++I+ NDIS
Sbjct: 461 QLDRAKEATKSSVLMDLESRIVASEDIGRQVLTYGERKPIEYFLKTVEEITLNDISSTAK 520
Query: 108 NAAKNKISIGAVGNLAFVPYI 46
+ +++ + G++A ++
Sbjct: 521 KIISSPLTLASWGDVACCVFV 541
>03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 46.4 bits (105), Expect = 3e-05
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 20/261 (7%)
Frame = -3
Query: 774 ISSESLQLFASQNITPSRCAVTVIG-----DSQERAALIVQNLKL---TSSDASQAEAST 619
I+ E LQ + + T R +T G D E A + +L T+S + +
Sbjct: 263 ITQEDLQKYIETHYTAPRMVITAAGAVKHDDIVEMATKLFNDLPTDPTTTSMLVSTQPAC 322
Query: 618 YYGGELRKEIGGD--LAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPL 451
+ G E+R I D LA A+A GA P LG+ + G + S L
Sbjct: 323 FTGSEVRI-IDDDMPLAQFAVAFNGASWIDPDSIALMVMQSMLGSWNKSAGGGKHMGSEL 381
Query: 450 AK--AIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKTSLS-----A 292
+ AI +I A FN +Y D GLFG V +V K + + LS
Sbjct: 382 VQRVAINDIAESIMA-FNTNYKDTGLFG-VYAVAKPDCLDDLAFAIMQEISKLSYRVTEE 439
Query: 291 DAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAV 112
D I+A +NQLK+ + D +++ E + Q L G ++ ID + + + +
Sbjct: 440 DVIRA-RNQLKSSIQLHLDGSTAVVEDIGRQLLIYGRRIPIPELFARIDAVDASTVKRVA 498
Query: 111 SNAAKNK-ISIGAVGNLAFVP 52
+ ++ I+I A+G + +P
Sbjct: 499 NRFIFDQDIAIAAMGPIQGLP 519
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 34.3 bits (75), Expect = 0.13
Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 16/257 (6%)
Frame = -3
Query: 774 ISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQNLKLTSSDASQAEA--STYYGGEL 601
I+ +Q F +N T R V G + + + L S E S Y GG+
Sbjct: 226 INGSIIQKFYHENFTADRLVVAASGVDHQYLLDVAEPLLSDWHKGSPVERPESKYIGGDF 285
Query: 600 RKEIGGDLAHVALAVQGAPAG----SPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGN 433
R ++ HVALA + P G G G + G ++
Sbjct: 286 RHRADSEMTHVALAFE-VPGGWLEERDATIMTVVQTLMGGGGSFSSGGPGKGMHSRLYLR 344
Query: 432 I--GPFAAAGFNV---SYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT-----SLSADAI 283
+ F+V ++ +GLFG+ L+ P D ++ +
Sbjct: 345 VLTKYHTVESFSVFSNAFDRSGLFGIYLTTPSDFVAKAVDIATKELIAIATPGQVTDIEL 404
Query: 282 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 103
KN + VL ++ +AE + Q L G + + +D+++ +DI+
Sbjct: 405 ARAKNSTISAVLMNLESRVIVAEDIGRQILTYGCRKPVDHFLQCMDEMTLDDITAFAKKM 464
Query: 102 AKNKISIGAVGNLAFVP 52
+ ++ + G++ VP
Sbjct: 465 LSSPPTMASWGDVDKVP 481
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 32.3 bits (70), Expect = 0.51
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 303 SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDI 124
++ D +K+ KN+ K + + D GSSL L + TGSV V A +SN +
Sbjct: 423 TVGEDGLKSSKNKTKRKYSDVVDDGSSLMNWLNGKKKRTGSVHHTV--AHPAGNLSNKKV 480
Query: 123 SQAVS 109
+ S
Sbjct: 481 TPTAS 485
>03_05_1146 -
30735010-30735216,30735336-30735650,30740169-30740191,
30740591-30740666,30740764-30740889,30740968-30741033,
30741296-30741539,30741639-30741691
Length = 369
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 718 CCYCNW*FSGKGCIDCSK-PKIDL-IRCFS 635
C YCN SGK I CSK P DL + CFS
Sbjct: 53 CNYCNKDISGKIRIKCSKCPDFDLCVECFS 82
>04_04_1202 - 31700414-31700854
Length = 146
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 771 SSESLQLFASQNITPSRCAVTVIGDSQERAALI--VQNLKLTSSDASQAEASTYYG 610
S SL L RC V V+G S AA++ + L L ++ AS+A A + G
Sbjct: 90 SCSSLVLVRRAEAKEKRCVVVVVGSSAASAAIVHGEKRLHLAAAPASEAAACSEIG 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,545,416
Number of Sequences: 37544
Number of extensions: 402218
Number of successful extensions: 913
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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