Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k23f
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 95 8e-20
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 91 1e-18
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 85 7e-17
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 64 1e-10
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 56 3e-08
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 43 3e-04
12_02_0312 + 17395716-17398112 31 1.5
03_05_1146 - 30735010-30735216,30735336-30735650,30740169-307401... 31 1.5
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635... 30 2.0
04_01_0310 + 4197835-4197875,4197994-4198924 29 3.5
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 29 3.5
04_04_1202 - 31700414-31700854 29 4.6
11_06_0545 + 24839536-24843421,24843871-24844310 29 6.0
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 8.0
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 8.0
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 94.7 bits (225), Expect = 8e-20
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 2/197 (1%)
Frame = +1
Query: 199 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 378
+ LPN +A+ + SP V + GS YE A G SH+L A +T N S +
Sbjct: 73 TTLPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLV 132
Query: 379 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 558
R++ IG VSAS RE + YT +A + + + +E+L + V N F WE+ + ++K
Sbjct: 133 REVEAIGGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAFFNWEIKEQLEKIKA 192
Query: 559 DI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAV 732
+I +S PQ ++ LH A Y L L I+ + S L+ F ++N T R +
Sbjct: 193 EIAEVSDNPQGLLLEALHSAGYSGALAKPLMAPQSAIHRLDSSILEEFIAENYTAPRMVL 252
Query: 733 TVIGDSQERAALIVQNL 783
G + I + L
Sbjct: 253 AASGVEHDELVSIAEPL 269
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 90.6 bits (215), Expect = 1e-18
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
Frame = +1
Query: 199 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 378
+ LPN +A+ + P V + GS YE + G SH+L A +T N S +
Sbjct: 125 TTLPNGIKIASETSPIPAVSVGLYIDCGSVYETSSSSGTSHLLERMAFKSTTNRSHLRLV 184
Query: 379 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 558
R++ IG V AS RE + YT +A + + +E+L + V N F WE+ + ++K
Sbjct: 185 REVEAIGGNVFASASREQMSYTYDALKCYAPEMVEVLIDSVRNPAFLEWEVKEQLQKIKS 244
Query: 559 DI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAV 732
+I +S P ++ LH A Y L L S +N + +L+ F S+N T R +
Sbjct: 245 EISEVSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYTAPRMVL 304
Query: 733 TVIGDSQERAALIVQNL 783
G + + + L
Sbjct: 305 AASGIEHDELVSVAEPL 321
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 85.0 bits (201), Expect = 7e-17
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 2/208 (0%)
Frame = +1
Query: 166 PAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGL 345
P + + + + + L N +A+ P V + GS +E LG + +L+ A
Sbjct: 69 PDLVEPGKTKITTLANGVKIASETTPGPSCSVGVYVNCGSVHEAPETLGATQLLKKMAYT 128
Query: 346 TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPW 525
TT N S + R++ +G V AS +RE + Y+ A + + + +E+L + V N F W
Sbjct: 129 TTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKTYMPEMVEVLIDCVRNPAFLDW 188
Query: 526 ELNDNAPRLKYDI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFA 699
E+ + +LK ++ S P+ ++ LH Y L L S ++ +++ L+ F
Sbjct: 189 EVKEQIMKLKAELAEASSNPETFLLEALHSTGYSGALATPLIASESSVSRLNTNVLEYFL 248
Query: 700 SQNITPSRCAVTVIGDSQERAALIVQNL 783
++N T R + G + I + L
Sbjct: 249 AENYTAPRIVLAATGVDHDELVSIAEPL 276
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 64.5 bits (150), Expect = 1e-10
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 2/184 (1%)
Frame = +1
Query: 199 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQ 378
+ LPN VA+ D P V + +GS YE G+SH+L + T + S I
Sbjct: 67 TTLPNGVRVASEDLPGPSACVGVFVDSGSVYETAETAGVSHLLERLSFKDTAHRSHLQIV 126
Query: 379 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 558
+ + G + AS RE Y+ E + L A+E+L + V N F E+ +
Sbjct: 127 QDVEATGGNIGASASREQTVYSYETLKAYLPQAIEVLIDCVRNPLFLQDEVERQVAFARE 186
Query: 559 DIISLP--PQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAV 732
++ L P+ + L+ Y L N L + + I+ +Q F +N T R V
Sbjct: 187 EVQELQKNPERFLQESLNLVGYTGALANPLVAPEESLTRINGSIIQKFYHENFTADRLVV 246
Query: 733 TVIG 744
G
Sbjct: 247 AASG 250
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 56.4 bits (130), Expect = 3e-08
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 4/186 (2%)
Frame = +1
Query: 199 SVLPNKTFVAALDN-GSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 375
+ LPN VA + S V + AGSRYE + G++H + T + ++ +
Sbjct: 102 TTLPNGLRVATESSLASRTATVGVWIDAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQL 161
Query: 376 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 555
+ ++ IG +++A RE Y + + AL IL +++ + + + +
Sbjct: 162 EEEIENIGGHLNAYTSREQTTYYAKVLDKDVPRALNILADILQHSKLEESRIERERDVIL 221
Query: 556 YDIISLPPQIRAV--DLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSRC 726
++ + Q V D LH A++ LG + S + + I+ E LQ + + T R
Sbjct: 222 REMEEVEGQYEEVIFDHLHATAFQYTSLGRPILGSAENVKSITQEDLQKYIETHYTAPRM 281
Query: 727 AVTVIG 744
+T G
Sbjct: 282 VITAAG 287
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 43.2 bits (97), Expect = 3e-04
Identities = 46/213 (21%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
Frame = +1
Query: 124 FIRHVT-IRGYAQAAPAVK-KDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEP 297
F+RH + + +P ++ D R+ + + A + + V + AGSR+E
Sbjct: 34 FLRHASPVPRDPDHSPFLRLPDARVSTLPTGLRIVTQAYPAATRMASVGVWVDAGSRFEL 93
Query: 298 QAELGLSHVLRSAAGL-TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLND 474
G +H L A TT+ ++ ++ ++ +GA ++A RE Y + +
Sbjct: 94 PGTNGTAHFLEHMAFKGTTRRPTANALEVEIENMGARLNAYTSREQTTYFADVQGRDVPI 153
Query: 475 ALEILNNLVSNQEFRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYR-RGLGNSLF 645
AL++L++++ F L + ++ + + V D LH AA++ LG+++
Sbjct: 154 ALDVLSDILQYPCFPANALQRERGVILREMEEVQGMMDEVIFDHLHAAAFQGHPLGDTIL 213
Query: 646 ISPKRINDISSESLQLFASQNITPSRCAVTVIG 744
+ I IS + L+ + + + T R V+ G
Sbjct: 214 GPVENIKSISKKDLEQYITTHYTCPRMVVSAAG 246
>12_02_0312 + 17395716-17398112
Length = 798
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +1
Query: 322 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 501
+++S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 502 SNQ 510
S +
Sbjct: 292 SGR 294
>03_05_1146 -
30735010-30735216,30735336-30735650,30740169-30740191,
30740591-30740666,30740764-30740889,30740968-30741033,
30741296-30741539,30741639-30741691
Length = 369
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 726 CCYCNW*FSGKGCIDCSK-PKIDL-IRCFS 809
C YCN SGK I CSK P DL + CFS
Sbjct: 53 CNYCNKDISGKIRIKCSKCPDFDLCVECFS 82
>08_02_1457 +
27260841-27260965,27261126-27261246,27263455-27263543,
27263776-27263860,27263970-27264074,27264446-27264527,
27264573-27264686,27265029-27265330,27265519-27266114,
27266216-27266376,27266489-27266592,27266697-27266856,
27266942-27267105,27267213-27267545,27267640-27267930,
27268276-27268359,27268430-27268563,27268665-27268892,
27268993-27269164,27269263-27269517,27269778-27270047
Length = 1324
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/105 (22%), Positives = 48/105 (45%)
Frame = +1
Query: 445 LEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIISLPPQIRAVDLLHKAAYRR 624
L+A KL+ +L++ + N E E+N + P+ + +S A L
Sbjct: 128 LKALAGKLDSSLKMKGKVTYNGE----EVNSSTPQYLHAYVSQYDLHHAEMTLSSLKKLI 183
Query: 625 GLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQER 759
G++L+ + N + +++++ Q + S CA T++GD R
Sbjct: 184 CTGHNLWRRKQPYNKLYYQAIKIECMQILGLSECADTLVGDEMRR 228
>04_01_0310 + 4197835-4197875,4197994-4198924
Length = 323
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 445 LEATQDKLND----ALEILNNLVSNQEFRPWELNDNAPRLKYDIISLPPQIRAVDLLHKA 612
LE +KL++ A+++ + +S E+R WEL+ +L +++ R V LL
Sbjct: 46 LEYENNKLSNEKRWAVDVYSRKISTLEYRVWELDHQNNKLSSELVRQTEDTRTVGLLFMN 105
Query: 613 AYRR 624
A R
Sbjct: 106 AADR 109
>01_05_0343 +
21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 259 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSA 414
+++A K GS E + E G++H++ A T ++ I + L IGA A
Sbjct: 80 LSLAVKVGSVVEEEDERGVAHIVEHLAFSATSRYTNHDIVKFLESIGAEFGA 131
>04_04_1202 - 31700414-31700854
Length = 146
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 673 SSESLQLFASQNITPSRCAVTVIGDSQERAALI--VQNLKLTSSDASQAEA 819
S SL L RC V V+G S AA++ + L L ++ AS+A A
Sbjct: 90 SCSSLVLVRRAEAKEKRCVVVVVGSSAASAAIVHGEKRLHLAAAPASEAAA 140
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 418 GDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWE 528
GD +FI +E+ Q L DA + NN S+Q+ W+
Sbjct: 29 GDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQ 65
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +1
Query: 304 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 483
E+ + +LRS + +K I + + + I D +F+Y +LE + L D ++
Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574
Query: 484 I 486
+
Sbjct: 575 L 575
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 100 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 240
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,069,610
Number of Sequences: 37544
Number of extensions: 427867
Number of successful extensions: 907
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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