Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k20r
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0100 - 11108275-11108535,11110333-11111619 32 0.49
09_04_0358 - 16937528-16937587,16938255-16938282,16938305-169383... 30 2.6
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328... 29 3.5
07_03_0256 - 15875066-15877025,15877292-15877911 29 6.1
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 29 6.1
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 28 8.0
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 8.0
01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636... 28 8.0
>01_02_0100 - 11108275-11108535,11110333-11111619
Length = 515
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 301 PVYGA*RAQDEGLAFAS--RSGLGRPARALHEPEALADESAR-HPQTG 167
P +GA A+ E LA A+ GL R H+ EA +DESAR P+ G
Sbjct: 7 PSHGAQAAEAEALAAAADLEQGLTRHLMEYHQSEASSDESARQRPRVG 54
>09_04_0358 -
16937528-16937587,16938255-16938282,16938305-16938328,
16938466-16938504,16938834-16938877,16939050-16939097
Length = 80
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 138 DCYEREKVISAHPAFRYELGYAPGESVTFK 49
DC E+++ A PAF+ + + G++VT K
Sbjct: 46 DCSSNERILCALPAFQVRMRHPRGQAVTMK 75
>07_01_0431 +
3283252-3283274,3283684-3283819,3285839-3286682,
3286785-3286856,3286906-3286937,3287020-3287433
Length = 506
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 100 WVSRNNL-FSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERAL 231
W SR +L F TVL + ++ DG+++++++ + RV+ L
Sbjct: 82 WCSRESLVFRFYTVLSMHHHIKRCWTSDGQRLNKELFIERVDSVL 126
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 28.7 bits (61), Expect = 6.1
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Frame = +1
Query: 52 EGHRFAWRVSQFVTEGWVSRNNLFSLVTVLGAS-------YQLRYVQF---GDGEQIHQQ 201
+G A RV + + VSR+N + VT++GAS ++R + F +G
Sbjct: 422 DGQVHACRVHDTILDFVVSRSNEENFVTMVGASDLTSTPTGKIRRLSFHKNSEGSVTMPT 481
Query: 202 VLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVH-EQL 378
LL R+L +H A Q P L LG + LR+L ++++ L +H D S G ++ L
Sbjct: 482 YLLRSHVRSLTTFLH-AGQVPPL-LGFYGLRVL-DLENCSGLKNH-DLKSIGRLIQLRYL 537
Query: 379 CMSG-DISQI 405
+ G DIS +
Sbjct: 538 NIKGTDISDL 547
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 667 LQHNSLASIEQVCQSINILTVPGHIHH--YLEVC-SQAMVRILIEINMV 804
L++NSL ++ C L P H+HH YL + SQ MVR+ EI+++
Sbjct: 572 LKYNSLRALYCRCFMGTNLIQPKHLHHLRYLNLTYSQNMVRLPEEISIL 620
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 28.3 bits (60), Expect = 8.0
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +1
Query: 211 VRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVHEQLCMSG 390
+++E A + + R +LH L T I+V S V+D F F GP M
Sbjct: 224 LKLEIAELKSMFIERAQALLHGDLHTGSIMVTPDSTQVIDPEFAF--YGP-------MGY 274
Query: 391 DISQILVFVLLLNFSQEGRCE 453
DI L ++L FSQ+G +
Sbjct: 275 DIGAFLGNLILAYFSQDGHAD 295
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 58 HRFAWRVSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQI 192
HR WR+SQF E +F L + G + Q RY+Q D +Q+
Sbjct: 602 HRSGWRISQFGVEVETPDFWMFKL-DIFGKAIQ-RYIQKPDKKQL 644
>01_01_0816 +
6360526-6360802,6360902-6361117,6361231-6361379,
6361474-6361750,6362228-6362457
Length = 382
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 385 SGDISQILVFVLLLNFSQEGRCESFAGHLVTES--TFFNSFLNLGN 516
S ++ +L+ +LLL + G+ ++GH +S +F NS+ + GN
Sbjct: 6 SNKMTLLLLLLLLLGCTHHGQANMYSGHPKIDSIFSFGNSYSDTGN 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,161,929
Number of Sequences: 37544
Number of extensions: 446573
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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