Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k20f
(791 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003417-1|AAH03417.1| 355|Homo sapiens NADH dehydrogenase (ubi... 124 3e-28
AF087854-1|AAP97164.1| 354|Homo sapiens NADH dehydrogenase prot... 124 3e-28
AF087661-1|AAD09755.1| 355|Homo sapiens NADH-ubiquinone oxidore... 124 3e-28
AC013469-3|AAY14737.1| 333|Homo sapiens unknown protein. 124 3e-28
AB209440-1|BAD92677.1| 241|Homo sapiens NADH dehydrogenase (ubi... 124 3e-28
BC031332-1|AAH31332.1| 201|Homo sapiens NDUFA10 protein protein. 103 7e-22
AF453834-1|AAL50984.1| 429|Homo sapiens NADH dehydrogenase ubiq... 103 7e-22
>BC003417-1|AAH03417.1| 355|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 10, 42kDa protein.
Length = 355
Score = 124 bits (300), Expect = 3e-28
Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 41 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 98
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 99 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 154
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRSTYYELRENTIEELMRPHLVIXLDLPV 790
QG+VLERS +SDFVFLEAMY+Q F+ K Y E++ TI + + PHLVI +D+PV
Sbjct: 155 QGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPV 211
>AF087854-1|AAP97164.1| 354|Homo sapiens NADH dehydrogenase
protein.
Length = 354
Score = 124 bits (300), Expect = 3e-28
Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 40 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 97
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 98 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 153
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRSTYYELRENTIEELMRPHLVIXLDLPV 790
QG+VLERS +SDFVFLEAMY+Q F+ K Y E++ TI + + PHLVI +D+PV
Sbjct: 154 QGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPV 210
>AF087661-1|AAD09755.1| 355|Homo sapiens NADH-ubiquinone
oxidoreductase 42 kDa subunit protein.
Length = 355
Score = 124 bits (300), Expect = 3e-28
Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 41 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 98
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 99 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 154
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRSTYYELRENTIEELMRPHLVIXLDLPV 790
QG+VLERS +SDFVFLEAMY+Q F+ K Y E++ TI + + PHLVI +D+PV
Sbjct: 155 QGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPV 211
>AC013469-3|AAY14737.1| 333|Homo sapiens unknown protein.
Length = 333
Score = 124 bits (300), Expect = 3e-28
Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 41 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 98
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 99 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 154
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRSTYYELRENTIEELMRPHLVIXLDLPV 790
QG+VLERS +SDFVFLEAMY+Q F+ K Y E++ TI + + PHLVI +D+PV
Sbjct: 155 QGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPV 211
>AB209440-1|BAD92677.1| 241|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 10, 42kDa precursor
variant protein.
Length = 241
Score = 124 bits (300), Expect = 3e-28
Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 46 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 103
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 104 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 159
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRSTYYELRENTIEELMRPHLVIXLDLPV 790
QG+VLERS +SDFVFLEAMY+Q F+ K Y E++ TI + + PHLVI +D+PV
Sbjct: 160 QGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPV 216
>BC031332-1|AAH31332.1| 201|Homo sapiens NDUFA10 protein protein.
Length = 201
Score = 103 bits (247), Expect = 7e-22
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 41 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 98
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 99 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 154
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRS 712
QG+VLERS +SDFVFLEAMY+Q F+ K S
Sbjct: 155 QGVVLERSIFSDFVFLEAMYNQGFIRKQCES 185
>AF453834-1|AAL50984.1| 429|Homo sapiens NADH dehydrogenase
ubiquinone 1 alpha subcomplex protein.
Length = 429
Score = 103 bits (247), Expect = 7e-22
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Frame = +2
Query: 269 WLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHY---IR 439
W L D+ + R + S+VI V+G + GK A +A+ LG KHFPEA +HY
Sbjct: 41 WHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAG--IHYPDSTT 98
Query: 440 PNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTG 619
+G L + + + +D N ++RL Q +Y +R QY DAL HL TG
Sbjct: 99 GDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRL----QSWLYSSRLLQYSDALEHLLTTG 154
Query: 620 QGIVLERSPYSDFVFLEAMYSQKFLSKAVRS 712
QG+VLERS +SDFVFLEAMY+Q F+ K S
Sbjct: 155 QGVVLERSIFSDFVFLEAMYNQGFIRKQCES 185
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,329,438
Number of Sequences: 237096
Number of extensions: 2393348
Number of successful extensions: 4615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -