Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k17r
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 185 8e-48
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 137 2e-33
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 38 0.002
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 30 0.35
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 27 2.5
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 3.3
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 4.3
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 27 4.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 5.7
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 7.6
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 7.6
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 185 bits (450), Expect = 8e-48
Identities = 104/265 (39%), Positives = 155/265 (58%), Gaps = 7/265 (2%)
Frame = -3
Query: 783 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYY-ENSYEPKVLITYSDNPH 607
+ IP T+E+ R DET++ + + EE Q +++ DE S Y+ E PK+L+T S
Sbjct: 49 ENIPATIESKRVYDETII---EDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRAS 105
Query: 606 SKTRIFGRELTRIIPNSLSRYRQRS-SVKRIVQSAIREDVTDVIIINENQRQPNGFLLIH 430
K F EL PN+ R R V I ++A + TD++++NE++++ N L+H
Sbjct: 106 RKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVH 165
Query: 429 LPAGPTAHFRLSSCKITPELGKDHKEITIHRPEVVLNNFSTRLGLTVGRMLGALFHYEPQ 250
LP GP+ +F LS+ + E+ +H T H PE+++NNFSTRLG+TV R +LF PQ
Sbjct: 166 LPNGPSFYFTLSNLQTAKEIS-NHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQ 224
Query: 249 FRGRRAVTFHNQRDYIFFRHHRYEFTK-----DGKRAKLCELGPRFTLKLISLQQGTFDS 85
+GR+ VT H QRD++FFR HRY F + DG L ELGPRFT++L +Q+G +D
Sbjct: 225 IQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDR 284
Query: 84 KRGDYEWIIAGRRHQMETSRRKFFL 10
K G+ + E+ RRKF+L
Sbjct: 285 KEGE---VFFESNAGEESDRRKFWL 306
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 137 bits (332), Expect = 2e-33
Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 14/246 (5%)
Frame = -3
Query: 729 VNADTEEQEEAQKDMELDE-------LSTYYENSY------EPKVLITYSDNPHSKTRIF 589
+N D +E + QKD + DE T ++ Y EPKVL+T S P S+ F
Sbjct: 42 LNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQF 101
Query: 588 GRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTA 409
+E+ +IPNS R V +V++A D+TD++I++E++ P+G ++ HLP GPT
Sbjct: 102 AKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTL 161
Query: 408 HFRLSSCKITPELGKDHKEITIHRPEVVLNNFSTRLGLTVGRMLGALFHYEPQFRGRRAV 229
F L + + ++ + ++ P ++ N +++LG V L ALF +P+ R V
Sbjct: 162 SFSLHNVVLRHDI-PNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVV 220
Query: 228 TFHNQRDYIFFRHHRYEFTKDGKRAKLCELGPRFTLKLISLQQGTFDSKRGDYEWIIAG- 52
TF N DYI FRHH Y T K+ L E GPRF +KL + GT D D EW +
Sbjct: 221 TFANTDDYISFRHHIYAKT-GPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPY 279
Query: 51 RRHQME 34
+RH+ +
Sbjct: 280 QRHKRD 285
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 37.5 bits (83), Expect = 0.002
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 11/194 (5%)
Frame = -3
Query: 639 KVLITYSDNPHSKTRIFGRELTRIIPNSL--SRYRQRSSVKRIVQSAIREDVTDVIIINE 466
KVL+ S + R +L ++P+S S+ + + ++ + A + ++
Sbjct: 44 KVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFES 103
Query: 465 NQRQPNGFLLIHLPAGPTAHFRLSSCKITPELGKDHKEITIHRPEVVLNN-FSTRLGLTV 289
+R+ + P GPT F + + EL + RP + + F T L V
Sbjct: 104 RRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKV 163
Query: 288 GRMLGALFHYEPQFRGR------RAVTFHNQRDYIFFRHHRYEFTKDGKR--AKLCELGP 133
+ L P+ R R T I+FR++ +D + L E+GP
Sbjct: 164 VKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGP 223
Query: 132 RFTLKLISLQQGTF 91
RF + +I++ +G+F
Sbjct: 224 RFVMTIINILEGSF 237
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 30.3 bits (65), Expect = 0.35
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Frame = -3
Query: 585 RELTRII-PNSLSRYRQRSS--VKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGP 415
R+L ++ P++ R ++R + +K + A VT +++++ N +I P GP
Sbjct: 47 RDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNAN-LRIIRAPRGP 105
Query: 414 TAHFRLSSCKITPE---LGKDHKEIT---IHRPEVVLNNFS 310
+ HFR+ + + L K+ K T + P +V+N+F+
Sbjct: 106 SLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFN 146
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 153 KLCELGPRFTLKLISLQQGTFDSK 82
KL E+GPR TL+LI + + K
Sbjct: 288 KLIEIGPRMTLELIKITEDAMGGK 311
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 657 ENSYEPKVLITYSDNPHSKTRIFGREL-TRIIPNSLSRYRQRSS 529
+ +YE + + D S RIF RE+ TRI L +Y RSS
Sbjct: 443 QGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSS 486
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = -3
Query: 792 DVPKKIPHTLETLRE-KDETMLVNA--DTEEQEEAQKDMELDELSTYYENSYEPKVLITY 622
D+ K + + TLR +DE L ++ +A + + T Y+ + LIT
Sbjct: 464 DLQKSLIEHVRTLRRIEDEITLTKMWISIAKESDAMSGHNIKSVETRLAKLYDQRSLITA 523
Query: 621 SDNPHSKTRIFGRELTRII 565
NP + F ++ I+
Sbjct: 524 KVNPEEICKTFQNSISHIV 542
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 154 GAFSVFCKFIPMMPEEYIVSLV 219
G ++F K +P MP+EYI L+
Sbjct: 137 GLKNIFMKQLPKMPKEYITRLI 158
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -3
Query: 603 KTRIFGRELTRIIPN----SLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLL 436
+ R REL R N SL+R R+R + R + + ++ + I+ + ++Q +L
Sbjct: 255 EAREAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEEREIVQKKKKQYRAWLA 314
Query: 435 IHLPAGPTA 409
+LP P++
Sbjct: 315 SNLPPEPSS 323
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 680 LMNFQHTMRIRMSQKC*SHTLIIHTVKLEYSEEN*LG--LYLILY 552
L+N +H M ++M+ C S TL+ EY N G LY +L+
Sbjct: 2059 LLNLEHRMMLQMAPDCDSLTLLQKLEVFEYVMANTDGYDLYHVLW 2103
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -3
Query: 603 KTRIFGRELTRIIPNSLSRYRQRSSVKRIVQ--SAIREDVTDVIIINENQRQPNGFLLIH 430
K ++ G+EL +++P+S+ SSV ++Q ++ + V+ N + PN L +
Sbjct: 325 KLKLSGKELPKVLPSSM-----LSSVAPLMQKSKSVPTSIPSVVPANISSPNPNPTLAPN 379
Query: 429 LPAGPT 412
P GP+
Sbjct: 380 -PTGPS 384
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 789 VPKKIPHTLETLR-EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 613
+P ++P L+ + + E+ +A E E D ++ LS YY +E K ++
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGKDSKKFTLV 563
Query: 612 PHSKTRIFGR 583
H +FGR
Sbjct: 564 KHFMNSLFGR 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,469,549
Number of Sequences: 5004
Number of extensions: 74691
Number of successful extensions: 250
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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