Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19k17r
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.6  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   8.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   8.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   8.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 672 LSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRS 532
           +S+Y+ NSY P +     ++PH   + +G  +   +P      +Q+S
Sbjct: 1   MSSYFANSYIPDLRNGGVEHPHQHQQHYGAAVQ--VPQQTQSVQQQS 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 720 DTEEQEEAQKDMELDEL 670
           +TEE+EE  K ++LD +
Sbjct: 319 ETEEEEENDKKLDLDSI 335


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 246  GIVVRSERAHLACDPR 293
            G V+RS R+H   DPR
Sbjct: 1670 GTVIRSIRSHSTWDPR 1685


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -3

Query: 708 QEEAQKDMELDELSTYYENSYEPKVLIT-YSDNPHSKTRIFG--RELTRIIPNSLSRYRQ 538
           +E  +KD + ++L    E   E +     YS +   + + +   RE  +    S  R+R 
Sbjct: 243 REYRKKDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRD 302

Query: 537 RSSVKRIVQSAIREDVTDVIIINEN 463
           R   +R  +S I   +++  I N N
Sbjct: 303 RRERERSKESKIISSLSNKTIHNNN 327


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 142 FAQLGAFSVFCKFIPMMPEEYIVSL 216
           FAQ G F+    F+P+ P  +I  L
Sbjct: 217 FAQNGPFNTTTIFVPVKPCPWICEL 241


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 588 GRELTRIIPNSLS 550
           GREL +I+P++LS
Sbjct: 57  GRELKKILPDALS 69


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 326 SSTTSVHDWV*PWV 285
           + T  +H W+ PW+
Sbjct: 534 TDTVPIHTWIHPWL 547


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 588 GRELTRIIPNSLS 550
           GREL +I+P++LS
Sbjct: 57  GRELKKILPDALS 69


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 100 RDIRLEARRLRMDHRRQETPNGNI*KEILFIV 5
           ++I LEA R  +D+RR+  P G +   +L ++
Sbjct: 501 QEIYLEALRAYVDNRRRPNP-GTVFARLLSVL 531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,297
Number of Sequences: 438
Number of extensions: 5354
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)