Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k17f
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 110 2e-25
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 81 2e-16
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.96
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 27 2.2
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.9
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 3.9
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 27 3.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 5.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 6.8
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 6.8
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.0
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 9.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 9.0
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 110 bits (264), Expect = 2e-25
Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Frame = +2
Query: 242 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYY-ENSYEPKVLITYSDNPH 418
+ IP T+E+ R DET++ + + EE Q +++ DE S Y+ E PK+L+T S
Sbjct: 49 ENIPATIESKRVYDETII---EDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRAS 105
Query: 419 SKTRIFGRELTRIIPNSLSRYRQRS-SVKRIVQSAIREDVTDVIIINENQRQPNGFLLIH 595
K F EL PN+ R R V I ++A + TD++++NE++++ N L+H
Sbjct: 106 RKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVH 165
Query: 596 LPAGPTAHFRLSSCKITPELGKDHKEITIHRPEVVLTNFSTRLGLTV 736
LP GP+ +F LS+ + E+ +H T H PE+++ NFSTRLG+TV
Sbjct: 166 LPNGPSFYFTLSNLQTAKEI-SNHGRSTGHIPELIINNFSTRLGMTV 211
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 81.0 bits (191), Expect = 2e-16
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Frame = +2
Query: 296 VNADTEEQEEAQKDMELDE-------LSTYYENSY------EPKVLITYSDNPHSKTRIF 436
+N D +E + QKD + DE T ++ Y EPKVL+T S P S+ F
Sbjct: 42 LNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQF 101
Query: 437 GRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTA 616
+E+ +IPNS R V +V++A D+TD++I++E++ P+G ++ HLP GPT
Sbjct: 102 AKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTL 161
Query: 617 HFRLSSCKITPELGKDHKEITIHRPEVVLTNFSTRLGLTV 736
F L + + ++ + ++ P ++ N +++LG V
Sbjct: 162 SFSLHNVVLRHDI-PNTGTMSEAYPHLIFENLTSKLGKRV 200
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 440 RELTRII-PNSLSRYRQRSS--VKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGP 610
R+L ++ P++ R ++R + +K + A VT +++++ N +I P GP
Sbjct: 47 RDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNAN-LRIIRAPRGP 105
Query: 611 TAHFRLSSCKITPELGKDHK 670
+ HFR+ + ++ + K
Sbjct: 106 SLHFRIHEYMLNKDVRRLQK 125
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 368 ENSYEPKVLITYSDNPHSKTRIFGREL-TRIIPNSLSRYRQRSS 496
+ +YE + + D S RIF RE+ TRI L +Y RSS
Sbjct: 443 QGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSS 486
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +2
Query: 233 DVPKKIPHTLETLRE-KDETMLVNA--DTEEQEEAQKDMELDELSTYYENSYEPKVLITY 403
D+ K + + TLR +DE L ++ +A + + T Y+ + LIT
Sbjct: 464 DLQKSLIEHVRTLRRIEDEITLTKMWISIAKESDAMSGHNIKSVETRLAKLYDQRSLITA 523
Query: 404 SDNPHSKTRIFGRELTRII 460
NP + F ++ I+
Sbjct: 524 KVNPEEICKTFQNSISHIV 542
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 166 LYFMQLK*CFLNSLKNKLVSWYTYQKLDYINS 71
++F + F+N +K+K +S T+ LDYI++
Sbjct: 122 IFFRYIVRQFVNGIKSKYLSKETFLNLDYIDN 153
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 422 KTRIFGRELTRIIPN----SLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLL 589
+ R REL R N SL+R R+R + R + + ++ + I+ + ++Q +L
Sbjct: 255 EAREAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEEREIVQKKKKQYRAWLA 314
Query: 590 IHLPAGPTA 616
+LP P++
Sbjct: 315 SNLPPEPSS 323
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 345 LMNFQHTMRIRMSQKC*SHTLIIHTVKLEYSEEN*LG--LYLILY 473
L+N +H M ++M+ C S TL+ EY N G LY +L+
Sbjct: 2059 LLNLEHRMMLQMAPDCDSLTLLQKLEVFEYVMANTDGYDLYHVLW 2103
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 422 KTRIFGRELTRIIPNSLSRYRQRSSVKRIVQ--SAIREDVTDVIIINENQRQPNGFLLIH 595
K ++ G+EL +++P+S+ SSV ++Q ++ + V+ N + PN L +
Sbjct: 325 KLKLSGKELPKVLPSSM-----LSSVAPLMQKSKSVPTSIPSVVPANISSPNPNPTLAPN 379
Query: 596 LPAGPT 613
P GP+
Sbjct: 380 -PTGPS 384
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 236 VPKKIPHTLETLR-EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 412
+P ++P L+ + + E+ +A E E D ++ LS YY +E K ++
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGKDSKKFTLV 563
Query: 413 PHSKTRIFGR 442
H +FGR
Sbjct: 564 KHFMNSLFGR 573
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 515 SAIREDVTDVIIINENQRQPNGFLLIHL 598
+A +T VI +NE + P+GF LI +
Sbjct: 928 NAETSSITSVISVNEALQYPSGFALISI 955
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 608 PTAHFRLSSCKITPELGKDHKEITIHRP 691
PT + L SC +L DH + T++ P
Sbjct: 486 PTRYTSLESCDFLIDLEFDHSKATVNEP 513
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 230 DDVPKKIPHTLETLREK-DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYS 406
D++ +++ + L EK DE + EE+E + E +E S+Y + +L
Sbjct: 295 DELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQEDYAILQAKC 354
Query: 407 DNPHSKTRIFGRELTRIIPNSLSRYRQRS 493
D + ++ +L + N + + S
Sbjct: 355 DEFADRIQVLTADLEKEKENQIMHESEAS 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,187
Number of Sequences: 5004
Number of extensions: 64568
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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