Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k17f
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0270 - 2001569-2001589,2001852-2001980,2002966-2003055,200... 118 4e-27
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316... 86 3e-17
11_06_0289 - 21969248-21973516 33 0.25
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012 32 0.58
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 32 0.58
11_06_0185 + 21018045-21022307 31 1.0
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 29 3.1
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 4.1
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 28 7.1
02_01_0353 + 2545982-2549833 28 9.4
01_07_0105 - 41104655-41104851,41105818-41107150 28 9.4
>06_01_0270 -
2001569-2001589,2001852-2001980,2002966-2003055,
2003361-2003466,2003985-2004064,2005895-2005977,
2006057-2006126,2006208-2006291,2006445-2006540,
2007555-2007635,2007844-2007999
Length = 331
Score = 118 bits (285), Expect = 4e-27
Identities = 64/168 (38%), Positives = 97/168 (57%)
Frame = +2
Query: 242 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHS 421
K +P T+E RE DET+ + +E + DE + + PKVLIT
Sbjct: 56 KLVPRTIENTREPDETVC----RPDDQELFAGNDADEFNAVLKQQTTPKVLITTCRFNSG 111
Query: 422 KTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLP 601
+ F EL ++IPNS R +K+IV+ A D T +++++ N+R+P+ L+I+LP
Sbjct: 112 RGPAFIEELMQVIPNSCYVKRGTYELKKIVEYANNRDFTSLVVVHTNRREPDALLIINLP 171
Query: 602 AGPTAHFRLSSCKITPELGKDHKEITIHRPEVVLTNFSTRLGLTVGSH 745
AGPTAHF+LS + ++ K+H T H+PE+VL NF+TRLG VG +
Sbjct: 172 AGPTAHFKLSKLILRKDI-KNHGNPTSHKPELVLNNFTTRLGHRVGRY 218
>08_01_0360 -
3160723-3160821,3160911-3160995,3161099-3161205,
3163066-3163155,3163265-3163408,3163572-3163622,
3163735-3163844,3163928-3164123
Length = 293
Score = 85.8 bits (203), Expect = 3e-17
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Frame = +2
Query: 221 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSY-EPKVLI 397
+E D K IP LR ++ + D E+++ A +D+ Y + EPK+L+
Sbjct: 33 REALDEGKPIP---TELRNEELALRREIDLEDKDSAVPRSLIDD--EYAGAALREPKILL 87
Query: 398 TYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 577
T S NP + F +EL + PNS R + IV+S D+TD+++++E++ QP+
Sbjct: 88 TTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHDITDLVLVHEHRGQPD 147
Query: 578 GFLLIHLPAGPTAHFRLSSCKITPELGKDHK---EITIHRPEVVLTNFSTRLG 727
G ++ HLP GPTA+F L + +T KD K +++ P ++L NF+T+ G
Sbjct: 148 GLIVCHLPFGPTAYFGLLNV-VTRHDIKDRKAMGKMSEAYPHLILDNFTTKTG 199
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +2
Query: 275 EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKT----RIFGR 442
+ DE + D EE+EE D + +E +E+ YE + ++ N SK ++
Sbjct: 517 DNDEDSNDDDDDEEEEEEDDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAE 576
Query: 443 ELTRIIPNSLSRYRQRSSVKRIVQSAIRE 529
+ T+ +L R + + Q +RE
Sbjct: 577 QATKTAATTLDEERIKQMINEAKQDVLRE 605
>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
Length = 401
Score = 31.9 bits (69), Expect = 0.58
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = -3
Query: 747 ACDPTVRPNRVLKLVRTTSGLCMVISLWSFPSSGVILQL 631
+CD + P++++ + LC+++ LW FP ++ ++
Sbjct: 198 SCDSKLCPSKLVVTAPAIASLCLIVKLWFFPGGLIVNEM 236
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 239 PKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDE 352
P + P LE+L E D T ++TE++EEA LD+
Sbjct: 464 PDEQPLPLESLHETDPTAQEASETEQEEEATASQRLDQ 501
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +2
Query: 305 DTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKT----RIFGRELTRIIPNSL 472
D +E+EE + D + +E +E+ YE + ++ N SK ++ + T+ +L
Sbjct: 525 DDDEEEEEEDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAEQATKTAATTL 584
Query: 473 SRYRQRSSVKRIVQSAIRE 529
R + + Q +RE
Sbjct: 585 DEERIKQMINEAKQDVLRE 603
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 619 VRSGTCRQMDEKKTIRLPLVLINYNHICDVFSDC*LYYTF 500
V G CR MD + L + ++N+N + DV++ L Y F
Sbjct: 429 VLHGCCRHMDIEVAYGLWIDMVNHNFVPDVYNYTSLIYAF 468
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 482 RQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTAHFRLSSCKI 643
R+ + R+V + V + +I + + +GFLL+ L GPT F L ++
Sbjct: 814 RELDPILRMVSGILHNGVRNRVITSLMKGSFDGFLLVLLAGGPTRAFTLQDSQM 867
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 269 EFPTCEGFS*VHHLPLVSF---LTCVFFYPFHEPFCTFIFYA 153
E P+ F VHH L SF L+CV PF+ F +F++
Sbjct: 55 ETPSIVRFQKVHHKLLDSFFSVLSCVVSVPFYTGFLPLLFWS 96
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 233 DVPKKIPHTLETLREKDET---MLVNADTEEQ--EEAQKDMELDELSTYYENSYEPK 388
DVPK++P L ++ +D L+N + EEQ E QK+ ++ +L +N P+
Sbjct: 433 DVPKELPGGLPLMKPEDYQYFGTLLNEEEEEQLSPEEQKERKIMKLLLKVKNGTPPQ 489
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 269 LREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKV 391
+ E++E ++V+ +TEE+EE + DE++ E KV
Sbjct: 380 VEEEEEKIIVSQETEEEEEKSAVISRDEITKVEVEREEIKV 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,646
Number of Sequences: 37544
Number of extensions: 370560
Number of successful extensions: 1055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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