Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k17f
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-7|CAA90124.4| 384|Caenorhabditis elegans Hypothetical pr... 130 1e-30
Z83246-2|CAB05841.1| 292|Caenorhabditis elegans Hypothetical pr... 81 1e-15
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 2.7
U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical pr... 29 2.7
U88168-1|AAC24403.2| 376|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical pr... 28 6.3
U88311-4|AAB42344.1| 537|Caenorhabditis elegans Udp-glucuronosy... 28 6.3
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 28 6.3
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 28 6.3
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 28 6.3
Z70270-1|CAB61007.1| 407|Caenorhabditis elegans Hypothetical pr... 28 8.4
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 28 8.4
AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical ... 28 8.4
AF029887-1|AAC48376.1| 407|Caenorhabditis elegans UNC-129 protein. 28 8.4
>Z49910-7|CAA90124.4| 384|Caenorhabditis elegans Hypothetical
protein F44G4.1 protein.
Length = 384
Score = 130 bits (313), Expect = 1e-30
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +2
Query: 227 GDDVPKK-IPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITY 403
G+ P+K +P T+E++RE D TM+ EE +E + D DE + Y+ PKV+IT
Sbjct: 128 GESAPQKEVPKTIESMREYDATMV----NEEDDEVEHDEANDEFAPYFNRETSPKVMITM 183
Query: 404 SDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGF 583
+ T F EL + IPNS R+ +K I++ A + TD+++++E++++PNG
Sbjct: 184 TPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGI 243
Query: 584 LLIHLPAGPTAHFRLSSCKITPELGKDHKEITIHRPEVVLTNFSTRLGLTVGSHARC 754
+ HLP GPTA+F+++S T +L K E T H PEV+L NF+TRLG + C
Sbjct: 244 IFCHLPEGPTAYFKINSLTFTQDL-KKFGESTSHFPEVILNNFNTRLGHNIARMLAC 299
>Z83246-2|CAB05841.1| 292|Caenorhabditis elegans Hypothetical
protein ZK795.3 protein.
Length = 292
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/121 (31%), Positives = 73/121 (60%)
Frame = +2
Query: 365 YENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDV 544
+ + +PK++IT S +P S+ ++F +E+ I PN+ R VK++VQ++ +D TD+
Sbjct: 72 WAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDL 131
Query: 545 IIINENQRQPNGFLLIHLPAGPTAHFRLSSCKITPELGKDHKEITIHRPEVVLTNFSTRL 724
II E + P+G L+ HLP GPTA F +++ + ++ + ++ P ++ N +++L
Sbjct: 132 IIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDI-PNCGTMSEQYPHLIFDNLNSKL 190
Query: 725 G 727
G
Sbjct: 191 G 191
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
H03E18.1 protein.
Length = 1147
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 257 TLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYE--PKVLITYSDNPHSKTR 430
T+ETL + N D++E+E+ KD L E+ E K+ IT S P S +
Sbjct: 879 TIETLLKAKIPESSNVDSQEKEDINKDPRLVEMKKVEAQVLEKLAKMEITESTAPDSTSS 938
Query: 431 IFGREL-TRIIPNSLSRYRQRSSVKRIVQSA 520
+ T + +++ ++S+K + A
Sbjct: 939 TIPENIETESTSSEITKQTAKTSMKSSIPEA 969
>U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical
protein ZK328.4 protein.
Length = 532
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 242 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHS 421
+KIP + + + D+ + + EE EE ++D++ +E Y E+S E + I+YSD
Sbjct: 199 RKIPVKKDFVVD-DDYISEESSEEESEEEEEDVDDEE---YRESSPEVEAKISYSDRKQK 254
Query: 422 K 424
K
Sbjct: 255 K 255
>U88168-1|AAC24403.2| 376|Caenorhabditis elegans Hypothetical
protein K11H12.9 protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.8
Identities = 33/128 (25%), Positives = 50/128 (39%)
Frame = +2
Query: 293 LVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSL 472
L + + +++ L LS Y N + + +P +KT G E++R +S
Sbjct: 11 LPGSSSPSSSSTTEELRLAALSPYSPNDDISSIPDSLEHSP-AKTSDDGSEISRANFSSP 69
Query: 473 SRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTAHFRLSSCKITPE 652
S RS K++ S + V + E P F I L AG + SC T
Sbjct: 70 SS-PSRSPSKKVSWSLFDQ----VSLSGEEFLLPRRFEAIELNAGTSTRSTSISCSATDL 124
Query: 653 LGKDHKEI 676
L DH I
Sbjct: 125 LESDHVTI 132
>Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 233 DVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 412
+ P I E+ E+ A E ++ E ++ S Y S E +V I +N
Sbjct: 717 EAPSTIGSLKRKATEESESSSTPAAKRESIRNKQKKEKEQYSAYPYVSEEEEVAIF--EN 774
Query: 413 PHSKTRIFGRELTRII 460
+ +++GREL R++
Sbjct: 775 SNGNPQVYGRELGRLL 790
>Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 233 DVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 412
+ P I E+ E+ A E ++ E ++ S Y S E +V I +N
Sbjct: 717 EAPSTIGSLKRKATEESESSSTPAAKRESIRNKQKKEKEQYSAYPYVSEEEEVAIF--EN 774
Query: 413 PHSKTRIFGRELTRII 460
+ +++GREL R++
Sbjct: 775 SNGNPQVYGRELGRLL 790
>U88311-4|AAB42344.1| 537|Caenorhabditis elegans
Udp-glucuronosyltransferase protein28 protein.
Length = 537
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 234 SSPSCFFSNLRFFLSFPRAIL 172
SS S FF N FL FPRA+L
Sbjct: 248 SSASIFFVNANPFLDFPRAVL 268
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 281 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 430
+E + + EA + LS Y +S+ PK+L ++ PHS R
Sbjct: 919 EEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALR 968
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 281 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 430
+E + + EA + LS Y +S+ PK+L ++ PHS R
Sbjct: 899 EEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALR 948
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 281 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 430
+E + + EA + LS Y +S+ PK+L ++ PHS R
Sbjct: 899 EEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALR 948
>Z70270-1|CAB61007.1| 407|Caenorhabditis elegans Hypothetical
protein C53D6.2 protein.
Length = 407
Score = 27.9 bits (59), Expect = 8.4
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +2
Query: 245 KIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNP--- 415
K+ HTL+T+ V TE+ + ++D+ +EL YY +Y L P
Sbjct: 209 KVNHTLDTVS-------VMKQTEQTKRKRRDLGNEELREYY--NYNSIPLDNDDREPIKR 259
Query: 416 -HSKTRIFGREL-TRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLL 589
+ K E+ + + R +RI + DV V++ N+N+ G L+
Sbjct: 260 KNGKKNSLSEEISSEDVWQGFGEETSREERERIANEELANDVRVVLLQNKNRCHKEGVLV 319
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 335 DMELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQR 490
D E ++L+ ++E++ E V TY+D+P + I + +RI+ L+R R
Sbjct: 249 DEEQEQLAKFWEDTAEKFVRETYADHPTIQCHI---KHSRIVDQGLTRNANR 297
>AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical
protein C35E7.4 protein.
Length = 646
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 245 KIPHTLETLREKDETMLVNADTEEQEEAQKDMELDEL 355
+ PH + D T +V A E+ + KD ELDE+
Sbjct: 503 QFPHQFVDVNPGDVTNMVIAQVHEEIDGLKDPELDEI 539
>AF029887-1|AAC48376.1| 407|Caenorhabditis elegans UNC-129 protein.
Length = 407
Score = 27.9 bits (59), Expect = 8.4
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +2
Query: 245 KIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNP--- 415
K+ HTL+T+ V TE+ + ++D+ +EL YY +Y L P
Sbjct: 209 KVNHTLDTVS-------VMKQTEQTKRKRRDLGNEELREYY--NYNSIPLDNDDREPIKR 259
Query: 416 -HSKTRIFGREL-TRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLL 589
+ K E+ + + R +RI + DV V++ N+N+ G L+
Sbjct: 260 KNGKKNSLSEEISSEDVWQGFGEETSREERERIANEELANDVRVVLLQNKNRCHKEGVLV 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,794
Number of Sequences: 27780
Number of extensions: 360797
Number of successful extensions: 1267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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