Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19k16r
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    41   2e-04
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   3.7  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   4.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   4.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   4.8  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   8.5  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   8.5  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = -2

Query: 623 SNEIFLIVAATIYYHEDNYEAALKILHNA-ESLELRAFTLQCLLAMNRPDLARKQLKLLQ 447
           S+ +   + A       +++ A+ +L  + E+LE  A  +   L  ++ + A + LK   
Sbjct: 94  SDSVVQTLGAIFQIKNGSFDDAMDLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQAL 153

Query: 446 DIEDDGTLTQLAQAWLNLIQGG-PGIQDAHYSVMELS 339
           D  D+  + QLAQ+W+ ++ GG     DA Y   EL+
Sbjct: 154 DWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 563 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTL 423
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG +
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = -2

Query: 872 YQQAINEAQSVSPSTPLVALQRD-AFLYRSYI-AQGNYRIVQQELKTADPMLQPLKSLVD 699
           Y  +  ++   S +T    L      LYR+    +G+Y IVQ+  ++A+P+       + 
Sbjct: 635 YSPSHKDSNKTSRNTSKEGLPSSPTMLYRTTSNTRGDY-IVQRTQQSANPLTNIEPQDMS 693

Query: 698 YLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 588
            L  D N S +VAD    +   T  ++ +   +A+ +
Sbjct: 694 NLSTDINASDVVADSTNSILYPTSTASSVANTIASDV 730


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 634 VRNCPMKYS*LWLQQFTIMKIIMKLH*KSFI 542
           +R CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 128 DSHPQHPFVKEYKAKTDEFQRLAAQYQPSVAS*THGVYVI 9
           +++  HPF  E++    E   L +  QPS  S THGV ++
Sbjct: 242 NAYGTHPFYLEHRYTPSE--NLNSDGQPSYTSSTHGVLML 279


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 590 IYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQL 414
           ++++   Y+  L +  N  S++    T + LL  N   L+ K LKL ++I+D  TL QL
Sbjct: 381 VHWNSTVYQELLNLKSNNSSVD-GVKTRRQLLEENAL-LSHKVLKLTEEIQDLETLNQL 437


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = -2

Query: 695 LLPDANKSA--IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLEL 522
           L  DA K+A  IV  + ++   G +         +AT+Y+       A+ + H A +L +
Sbjct: 166 LQKDATKAADLIVKALLSKQFNGDDEQKSRLFEQSATLYFQAGTPSYAVPLYHEALNLTM 225

Query: 521 RAFTLQCLLAMNRPDLARKQLKLLQ--DIEDDGTLTQLAQAW 402
              +   L+ MN  +LA   L   +  D +   TL + +Q+W
Sbjct: 226 ANPSCHGLILMN--NLATSLLAQTETVDKKHHETLMKQSQSW 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,755
Number of Sequences: 5004
Number of extensions: 64653
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)