Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k16r
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 151 6e-37
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 144 9e-35
03_06_0191 - 32228642-32228949,32229028-32230567 33 0.41
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 31 1.3
01_03_0196 - 13696056-13697448,13697676-13697713 30 2.2
01_03_0224 + 13940419-13941786 29 3.8
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 5.1
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 6.7
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438... 28 8.9
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 28 8.9
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 28 8.9
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 151 bits (367), Expect = 6e-37
Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 1/281 (0%)
Frame = -2
Query: 905 FRCKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KTADP 729
F +N FY+G YQ AIN + V A +RDA ++RSY+A G+Y++V E+ +A
Sbjct: 8 FNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSSAAT 66
Query: 728 MLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKI 549
LQ +K L YL D +SAIV+ + ++ SN + ++A I+ HE +Y ALK
Sbjct: 67 SLQAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKH 124
Query: 548 LHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGIQ 369
H+ +L+L A +Q + M+R D A KQLK++Q I++D TLTQLA AWL++ GG I+
Sbjct: 125 THSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIR 184
Query: 368 DAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXXXXXX 189
+A+ + +E G ++EAE L +A ++ +
Sbjct: 185 EAYLIFQDFAE-KYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIV 243
Query: 188 XXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 66
GKP S+RYL+QL SHP H VK + D F+R
Sbjct: 244 CNLHLGKP---SSRYLSQLKLSHPDHVLVKRAVSAEDNFER 281
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 144 bits (349), Expect = 9e-35
Identities = 95/285 (33%), Positives = 146/285 (51%), Gaps = 5/285 (1%)
Frame = -2
Query: 905 FRCKNAFYVGNYQQAINEAQSV---SPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKT- 738
F +N+FYVG YQ I Q++ + +P +RD+ LYRSYIA G++++V E+
Sbjct: 11 FGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPG 70
Query: 737 ADPMLQPLKSLVDYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEA 561
A LQ ++ L YL A K + + ++ +A SN I +VA T+ HE +Y
Sbjct: 71 AATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAG 130
Query: 560 ALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG 381
ALK ++ ++EL A +Q L M+R D A KQL+++Q +++D TLTQLA AW++L+ GG
Sbjct: 131 ALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGG 190
Query: 380 PGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXXX 201
IQ+AH +LSE +E+AE L ++ ++ +
Sbjct: 191 SKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGN-FEDAEGLLLESLNKDAKDAETLA 249
Query: 200 XXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 66
GK ++RYL QL +HP H VK + D F R
Sbjct: 250 NLVVCSLNLGKS---ASRYLNQLKLAHPDHMLVKRMSSAEDSFDR 291
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = -2
Query: 743 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 564
K P + S+++ L + V V + TE+++ + + + + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517
Query: 563 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 447
AL +L N ES+ L+CL+ + DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -2
Query: 170 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 42
+P EV +L+ DS P+HP +K++ + + + A+ QPS
Sbjct: 19 EPEEVE--WLSSSSDSEPEHPALKQWTPSSPDSEEAEAEQQPS 59
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 584 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 456
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 512 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 378
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 138 GQVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTSGSCSPST 299
G R W PE R ER+ ++ G W R + Q + +L S CSPST
Sbjct: 100 GMAGTREGSWTPERRGEERRRRREEG-SWFLARSL-QSVGTLHVGFSSRCSPST 151
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = -2
Query: 755 QQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 576
Q+E++T D Q L DY +PD AI D+D ++ + + + + +V T +Y
Sbjct: 1317 QKEIQTGDTPHQELLDNRDYTIPDGAIVAI-RDLDQQMYVSIKNTGKKYQVV-GTYHYSL 1374
Query: 575 DNYEAALKILHN 540
+ A K+ H+
Sbjct: 1375 SSECALFKVKHH 1386
>11_06_0608 -
25442883-25443206,25443420-25443623,25443831-25443859,
25444335-25444557
Length = 259
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 796 RNASRWSATRGVEGLTLCASLIA 864
R RW A GV GL LCA+ ++
Sbjct: 39 REQWRWEAVEGVRGLWLCAAFLS 61
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 214 PTCCSALRSPRRISGNHRR 158
PT C+ R PR G+HRR
Sbjct: 55 PTSCATARQPRHARGHHRR 73
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 4 VRITYTPCV*LATEGWYCAARRWNSSVLALYSFTKGCWGW 123
+R+ PC +EG + AARR+ SS++ ++G GW
Sbjct: 130 LRLIVFPCSYACSEGTFIAARRYASSMVPTSIISQGI-GW 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,398,542
Number of Sequences: 37544
Number of extensions: 469629
Number of successful extensions: 1396
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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