Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k16f
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 139 2e-33
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 137 7e-33
03_06_0191 - 32228642-32228949,32229028-32230567 33 0.30
01_03_0196 - 13696056-13697448,13697676-13697713 30 1.6
01_03_0224 + 13940419-13941786 29 2.8
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 4.9
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438... 28 6.4
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 139 bits (337), Expect = 2e-33
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 5/198 (2%)
Frame = +1
Query: 37 DELFDVKNAFYVGNYQQAINEAQSV---SPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL 207
D LF ++N+FYVG YQ I Q++ + +P +RD+ LYRSYIA G++++V E+
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 208 KT-ADPMLQPLKSLVDYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDN 381
A LQ ++ L YL A K + + ++ +A SN I +VA T+ HE +
Sbjct: 68 GPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 382 YEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLI 561
Y ALK ++ ++EL A +Q L M+R D A KQL+++Q +++D TLTQLA AW++L+
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187
Query: 562 QGGPGIQDAHYSVMELSE 615
GG IQ+AH +LSE
Sbjct: 188 MGGSKIQEAHLIFQDLSE 205
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 137 bits (332), Expect = 7e-33
Identities = 77/194 (39%), Positives = 119/194 (61%), Gaps = 1/194 (0%)
Frame = +1
Query: 37 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 213
D LF+++N FY+G YQ AIN + V A +RDA ++RSY+A G+Y++V E+ +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSS 63
Query: 214 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 393
A LQ +K L YL D +SAIV+ + ++ SN + ++A I+ HE +Y A
Sbjct: 64 AATSLQAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEA 121
Query: 394 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573
LK H+ +L+L A +Q + M+R D A KQLK++Q I++D TLTQLA AWL++ GG
Sbjct: 122 LKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGS 181
Query: 574 GIQDAHYSVMELSE 615
I++A+ + +E
Sbjct: 182 KIREAYLIFQDFAE 195
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +1
Query: 208 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 387
K P + S+++ L + V V + TE+++ + + + + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517
Query: 388 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 504
AL +L N ES+ L+CL+ + DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 367 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 495
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 439 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 573
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +1
Query: 196 QQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 375
Q+E++T D Q L DY +PD AI D+D ++ + + + + +V T +Y
Sbjct: 1317 QKEIQTGDTPHQELLDNRDYTIPDGAIVAI-RDLDQQMYVSIKNTGKKYQVV-GTYHYSL 1374
Query: 376 DNYEAALKILHN 411
+ A K+ H+
Sbjct: 1375 SSECALFKVKHH 1386
>11_06_0608 -
25442883-25443206,25443420-25443623,25443831-25443859,
25444335-25444557
Length = 259
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 155 RNASRWSATRGVEGLTLCASLIA 87
R RW A GV GL LCA+ ++
Sbjct: 39 REQWRWEAVEGVRGLWLCAAFLS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,668
Number of Sequences: 37544
Number of extensions: 347629
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -