Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19k15f
(713 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein. 33 1.0
AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot... 31 3.1
U72355-1|AAC00056.1| 915|Homo sapiens Hsp27 ERE-TATA-binding pr... 31 4.1
L43631-1|AAC18697.1| 864|Homo sapiens scaffold attachment facto... 31 4.1
BC126219-1|AAI26220.1| 917|Homo sapiens scaffold attachment fac... 31 4.1
AB208780-1|BAD92017.1| 772|Homo sapiens scaffold attachment fac... 31 4.1
D63478-1|BAA09765.1| 983|Homo sapiens KIAA0144 protein. 30 9.5
BC003170-1|AAH03170.1| 1087|Homo sapiens ubiquitin associated pr... 30 9.5
AL590431-27|CAH71285.1| 398|Homo sapiens ubiquitin associated p... 30 9.5
AL590431-26|CAH71284.1| 1087|Homo sapiens ubiquitin associated p... 30 9.5
AL590431-25|CAH71283.1| 983|Homo sapiens ubiquitin associated p... 30 9.5
AJ243670-1|CAB65101.2| 398|Homo sapiens NICE-4 protein protein. 30 9.5
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 30 9.5
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 30 9.5
>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
Length = 4243
Score = 33.1 bits (72), Expect = 1.0
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +1
Query: 205 VEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSAS 384
+++ DYT + +I S +GT AE A E +S V D++ + P T+++ L P + +
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLS-QSMTPFTYAVSLT-PLI--T 2094
Query: 385 AVAVNGQATIFGRELAVASSG-SLVVEDIRL 474
AV+ +T G L V SG S +ED+ +
Sbjct: 2095 AVSPKRGSTAGGTRLTVVGSGFSENMEDVHI 2125
>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
Length = 1569
Score = 31.5 bits (68), Expect = 3.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 590 TSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKM 411
+ LP TLR+ +T PTV A + T S + +T LP AT+ + P +
Sbjct: 1283 SGLPPTATLRSTATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLPTPATSGTSPTL 1342
>U72355-1|AAC00056.1| 915|Homo sapiens Hsp27 ERE-TATA-binding
protein protein.
Length = 915
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 369 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 247
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150
>L43631-1|AAC18697.1| 864|Homo sapiens scaffold attachment factor B
protein.
Length = 864
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 369 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 247
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 59 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 99
>BC126219-1|AAI26220.1| 917|Homo sapiens scaffold attachment factor
B protein.
Length = 917
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 369 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 247
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150
>AB208780-1|BAD92017.1| 772|Homo sapiens scaffold attachment factor
B variant protein.
Length = 772
Score = 31.1 bits (67), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 369 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 247
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 130 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 170
>D63478-1|BAA09765.1| 983|Homo sapiens KIAA0144 protein.
Length = 983
Score = 29.9 bits (64), Expect = 9.5
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 671 RSP*SARCKXSRSSGSLLFKASFSFSDTSLPKRTTLRADSTLPTVRTAL---SSLTLMLG 501
R+ S S S + L +S +FS TS +T+ A + +V ++L SSL L LG
Sbjct: 712 RTSTSTLLHTSVESEANLHSSSSTFSTTS----STVSAPPPVVSVSSSLNSGSSLGLSLG 767
Query: 500 SNRKLTVETRRISSTT 453
SN +T TR +TT
Sbjct: 768 SNSTVTASTRSSVATT 783
>BC003170-1|AAH03170.1| 1087|Homo sapiens ubiquitin associated
protein 2-like protein.
Length = 1087
Score = 29.9 bits (64), Expect = 9.5
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 671 RSP*SARCKXSRSSGSLLFKASFSFSDTSLPKRTTLRADSTLPTVRTAL---SSLTLMLG 501
R+ S S S + L +S +FS TS +T+ A + +V ++L SSL L LG
Sbjct: 712 RTSTSTLLHTSVESEANLHSSSSTFSTTS----STVSAPPPVVSVSSSLNSGSSLGLSLG 767
Query: 500 SNRKLTVETRRISSTT 453
SN +T TR +TT
Sbjct: 768 SNSTVTASTRSSVATT 783
>AL590431-27|CAH71285.1| 398|Homo sapiens ubiquitin associated
protein 2-like protein.
Length = 398
Score = 29.9 bits (64), Expect = 9.5
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 671 RSP*SARCKXSRSSGSLLFKASFSFSDTSLPKRTTLRADSTLPTVRTAL---SSLTLMLG 501
R+ S S S + L +S +FS TS +T+ A + +V ++L SSL L LG
Sbjct: 42 RTSTSTLLHTSVESEANLHSSSSTFSTTS----STVSAPPPVVSVSSSLNSGSSLGLSLG 97
Query: 500 SNRKLTVETRRISSTT 453
SN +T TR +TT
Sbjct: 98 SNSTVTASTRSSVATT 113
>AL590431-26|CAH71284.1| 1087|Homo sapiens ubiquitin associated
protein 2-like protein.
Length = 1087
Score = 29.9 bits (64), Expect = 9.5
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 671 RSP*SARCKXSRSSGSLLFKASFSFSDTSLPKRTTLRADSTLPTVRTAL---SSLTLMLG 501
R+ S S S + L +S +FS TS +T+ A + +V ++L SSL L LG
Sbjct: 712 RTSTSTLLHTSVESEANLHSSSSTFSTTS----STVSAPPPVVSVSSSLNSGSSLGLSLG 767
Query: 500 SNRKLTVETRRISSTT 453
SN +T TR +TT
Sbjct: 768 SNSTVTASTRSSVATT 783
>AL590431-25|CAH71283.1| 983|Homo sapiens ubiquitin associated
protein 2-like protein.
Length = 983
Score = 29.9 bits (64), Expect = 9.5
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 671 RSP*SARCKXSRSSGSLLFKASFSFSDTSLPKRTTLRADSTLPTVRTAL---SSLTLMLG 501
R+ S S S + L +S +FS TS +T+ A + +V ++L SSL L LG
Sbjct: 712 RTSTSTLLHTSVESEANLHSSSSTFSTTS----STVSAPPPVVSVSSSLNSGSSLGLSLG 767
Query: 500 SNRKLTVETRRISSTT 453
SN +T TR +TT
Sbjct: 768 SNSTVTASTRSSVATT 783
>AJ243670-1|CAB65101.2| 398|Homo sapiens NICE-4 protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 9.5
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -1
Query: 671 RSP*SARCKXSRSSGSLLFKASFSFSDTSLPKRTTLRADSTLPTVRTAL---SSLTLMLG 501
R+ S S S + L +S +FS TS +T+ A + +V ++L SSL L LG
Sbjct: 42 RTSTSTLLHTSVESEANLHSSSSTFSTTS----STVSAPPPVVSVSSSLNSGSSLGLSLG 97
Query: 500 SNRKLTVETRRISSTT 453
SN +T TR +TT
Sbjct: 98 SNSTVTASTRSSVATT 113
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 29.9 bits (64), Expect = 9.5
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 641 SRSSGSLLFKASFSFSDTSLPKRTTLRADSTLP-TVRTALSSLTLMLGSNRKLTVETRRI 465
S S + K S S S SLP T+ STLP ++ ++ S+T +L T +T
Sbjct: 10010 SWKSSPFVEKTSSSSSLLSLPVTTSPSVSSTLPQSIPSSSFSVTSLLTPGMVKTTDTSTE 10069
Query: 464 SSTTRLPLLATANSLPKMVA*PLTATAEALSLGRARSMLNV 342
T+ P L + S+ + A +T E + + ++ NV
Sbjct: 10070 PGTSLSPNL-SGTSVEILAASEVTTDTEKIHPSSSMAVTNV 10109
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 29.9 bits (64), Expect = 9.5
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -1
Query: 641 SRSSGSLLFKASFSFSDTSLPKRTTLRADSTLP-TVRTALSSLTLMLGSNRKLTVETRRI 465
S S + K S S S SLP T+ STLP ++ ++ S+T +L T +T
Sbjct: 1714 SWKSSPFVEKTSSSSSLLSLPVTTSPSVSSTLPQSIPSSSFSVTSLLTPGMVKTTDTSTE 1773
Query: 464 SSTTRLPLLATANSLPKMVA*PLTATAEALSLGRARSMLNV 342
T+ P L + S+ + A +T E + + ++ NV
Sbjct: 1774 PGTSLSPNL-SGTSVEILAASEVTTDTEKIHPSSSMAVTNV 1813
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,513,545
Number of Sequences: 237096
Number of extensions: 1601558
Number of successful extensions: 3903
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3903
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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