Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19k11f
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286...    70   2e-12
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    43   2e-04
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    42   7e-04
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    37   0.015
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683...    32   0.55 
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517...    28   6.7  
03_06_0040 + 31240164-31241102,31241280-31241897                       28   6.7  

>04_04_0631 -
           26728144-26728228,26728321-26728398,26728584-26728650,
           26728748-26728824,26729961-26730012,26730248-26730294,
           26730457-26730527
          Length = 158

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
 Frame = +1

Query: 160 HILTIPKRHIEDVKSL--TSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVK 333
           H L IP  HI  V +L  T+ D +L++ M+++ R+LL+++  + E+ RFG+H PPF SV 
Sbjct: 58  HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117

Query: 334 HLHLHTIA 357
           HLHLH +A
Sbjct: 118 HLHLHCLA 125


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 58  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKS 204
           C+FC I    +    LYEDD      D KP S  H L IPKRH   +++
Sbjct: 73  CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121


>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 24/54 (44%), Positives = 31/54 (57%)
 Frame = +1

Query: 61  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK 222
           IF  I  K   + ++YED++V  FRDI P +  H+L IPK  I D   LT  DK
Sbjct: 46  IFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK--IRD--GLTGLDK 95


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +1

Query: 61  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK---ELL 231
           +F  I  K   + ++++D++V  FRDI P +  HI+ IPK   + +  L+ A++   E+L
Sbjct: 195 VFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVK-DGLTGLSKAEERHVEIL 253

Query: 232 NRMMSISRELLSKNNL 279
             ++ +++ +  +  L
Sbjct: 254 GYLLYVAKVVAKQEGL 269


>05_06_0060 -
           25266735-25267210,25267323-25267569,25267650-25268345,
           25268457-25268709,25268786-25269261,25270760-25270909
          Length = 765

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 241 MSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFV 420
           M +SR+ LS NN+S +D  FG     F+ V  +    +     +G+   ++   + YWF 
Sbjct: 527 MPVSRDTLSPNNVSFDDCHFGTQC--FQQVTKVKSRIVLKILRLGY-NVLLSDVDVYWFH 583

Query: 421 SP 426
           +P
Sbjct: 584 NP 585


>04_04_0268 -
           24050721-24050971,24051112-24051276,24051479-24051749,
           24052344-24052517
          Length = 286

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +1

Query: 187 IEDVKSLTSADKELLNRMMSISRELLSKNNLS--IEDARFGYHWPPFRSVKHLHLHTIAP 360
           IE +  L +A  E + R  S + +LL   +LS  + D R G  WP       +H+   AP
Sbjct: 170 IEHIPELVAASTENVQR--SAAAQLLKDGSLSFHVADGRLG--WPDDAPYDAIHVGAAAP 225

Query: 361 ESEMGFI------GRVIFKKNSYW 414
           E     +      GR++    SY+
Sbjct: 226 EIPQPLVDQLKTGGRMVIPVGSYF 249


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 208 TSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHL 345
           T  D    NR    S+ L + N  S+  A +G HW   R +  +HL
Sbjct: 90  TDNDVCFANRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVHL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,821
Number of Sequences: 37544
Number of extensions: 325874
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)