Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19k03r
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    29   1.2  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   2.7  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   6.2  

>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 681 RYIQLQKKVNMNLVFLHKIIVTRCIGFYRKVRGFK 577
           R++Q +K      V LHK++V R  GF  K  G K
Sbjct: 59  RFVQQRKTFCGASVCLHKVLVQRQFGFEEKSHGLK 93


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 318 LNRLFNDYNDQSAFHYFVSMYFKSILISLHVCLTKIYIMFFAKCTLKY 175
           L R   D N Q+ +    S YF ++  ++H    K  ++FF+K  L++
Sbjct: 807 LQRQHQDCNIQAIYVTKPSQYFHALRRNIHRQFRKPLVIFFSKSLLRH 854


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 306 FNDYNDQSAFHYFVSMYFKSILISLHVCLTKIYIMFFAK 190
           FN + D++A + +  ++   +L SLH+ +TKI  +F+ +
Sbjct: 400 FNLFMDKNALNVYSDLWI--LLGSLHLSITKIKSLFYER 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,472,375
Number of Sequences: 5004
Number of extensions: 70454
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)