Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19j19r
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   8.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   8.5  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    22   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.5  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 214 YPMNTTNGKR 243
           YP+NTTNG++
Sbjct: 363 YPLNTTNGRK 372


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 89  LTVLAGDVRSGSCYNV*SCNG 27
           L  + GD  SG  Y V SC G
Sbjct: 109 LCSICGDRASGKHYGVYSCEG 129


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 89  LTVLAGDVRSGSCYNV*SCNG 27
           L  + GD  SG  Y V SC G
Sbjct: 109 LCSICGDRASGKHYGVYSCEG 129


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 30

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 92 ILTVLAGDVRSGSCYNV*SCNG 27
          +L  + GD  SG  Y V SC G
Sbjct: 7  VLCRVCGDKASGFHYGVHSCEG 28


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 92  ILTVLAGDVRSGSCYNV*SCNG 27
           +L  + GD  SG  Y V SC G
Sbjct: 65  VLCRVCGDKASGFHYGVHSCEG 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,011
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)