Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19j15f
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    30   0.29 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.68 
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    28   1.6  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    27   2.7  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    27   2.7  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   4.8  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   4.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   6.3  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 422 PFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSLKWKLKLYSI 577
           P +   + + ++K+RNL +     R  DT  +++  E+ M + + + K+YSI
Sbjct: 45  PVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMNAEQTRQKIYSI 96


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 378 VNSSTNCPPVCRSEGLALSTSPSLP 304
           + SS N  P+CR++G+A +++PS P
Sbjct: 557 LTSSQNSCPLCRTKGVASASTPSSP 581


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 328 AFHVAIAAHVHGVPSPGQLLIR-NQARVVECVVL 230
           AF +  +  VH  P PG +L+R NQA + + V+L
Sbjct: 331 AFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVIL 364


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 365 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 526
           V +L +E+D+  Q  +   P +  +  EN+K +    +   +G  +  NP  +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = +2

Query: 314 GDVESARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANG 493
           G++   +    Q G +F+    R +  +      APP     +  +   S       +  
Sbjct: 187 GEILRRKDMLEQLGSEFLS-FKRLV--KNANSPVAPPSASSQLNSSNPSSPFRPLSASTD 243

Query: 494 RQSDTNPNFIY*ENRMKSLKWKLKLYSIQQYG*FSNYLEHQEL-TSFFLPLV 646
           +QS+T+ N +  +NRM   +   KL ++  Y   +  +E Q++     LP++
Sbjct: 244 KQSNTSLNRVLGKNRMPETQTTKKLDNVGLYNMQNQTMEDQDMQAESLLPII 295


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = -3

Query: 198 IRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLTIMIVSN 67
           + P  C + T+   +    H+T  +   + H +LN    ++  N
Sbjct: 342 VNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKN 385


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 358 PTRLPLRRSGAFHVAIAAHVHGVP 287
           P  LPL++ GAFH+A+ A V  +P
Sbjct: 190 PCLLPLKK-GAFHLAVQAQVPIIP 212


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 174  STLRLMEATLAHST-TAITNTTSHAQLNTLTIMIVSNSIVLNDRSHV 37
            ST   M  T++H+T T+ + TTSH   NTL     ++  + +  S V
Sbjct: 3716 STGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGV 3762


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +2

Query: 326  SARPSERQTGGQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKK 460
            ++RPS  +    ++  +T  +D+R+++     P    SI E +++
Sbjct: 919  ASRPSLSRRRNDYINNVTSWLDERREKMGVVRPRASTSILETRRR 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,054
Number of Sequences: 5004
Number of extensions: 70719
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)